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1.F.1.1.1
The SNARE fusion complex, fusing neurotransmitter vesicles with the presynaptic membrane. Ca2+ acts on the synaptic vesicle synaptotagmin1 (synaptotagmin I; SytI, Syt1, SSVP65, SYT) to trigger rapid exocytosis (Chapman, 2008).  Syt1 is a major Ca2+ sensor for fast neurotransmitter release. It contains tandem Ca2+-binding C2 domains (C2AB), a single transmembrane α-helix and a highly charged 60-residue- long linker in between. The linker region of Syt1 is essential for its two signature functions: Ca2+-independent vesicle docking and Ca2+-dependent fusion pore opening. The linker contains the basic-amino acid-rich N-terminal region and the acidic amino acid-rich C-terminal region (Lai et al. 2013).  The intrinsically disordered region between Syt I's transmembrane helix and the first C2 domain interats with vesicular lipids and modulates Ca2+ binding to C2 (Fealey et al. 2016). t-SNARE and v-SNARE interact in their C-terminal TMSs to promote pore opening (Wu et al. 2016).  Both sides of a trans-SNARE complex can drive pore opening suggesting an indentation model in which multiple SNARE C-termini cooperate in opening the fusion pore by locally deforming the inner leaflets (D'Agostino et al. 2016). The TMSs of SNARE proteins regulate the fusion process (Wu et al. 2017). The cysteine-rich domain of SNAP-23 regulates its membrane association and exocytosis from mast cells (Agarwal et al. 2019). Snc1 is trafficked between the endosomal system and the Golgi apparatus via multiple pathways, providing evidence for protein quality control surveillance of a SNARE protein in the endo-vacuolar system (Ma and Burd 2019). MemDis is a novel prediction method, utilizing a convolutional neural network and long short-term memory networks for predicting disordered regions in transmembrane proteins (Dobson and Tusnády 2021). Curcuminoids (bisdemethoxycurcumin and curcumin) modulate the release of neurotransmitters during exocytosis (Li et al. 2016). Oxidative stress-induced inhibition of VAMP8 trafficking to lysosomes is associated with the development of neurodegenerative diseases due to blocked autophagosome-lysosome fusion (Ohnishi et al. 2022). Calcium (Ca2+) plays a critical role in triggering all three primary modes of neurotransmitter release (synchronous, asynchronous, and spontaneous). Synaptotagmin1, a protein with two C2 domains, is the first isoform of the synaptotagmin family that was identified and demonstrated as the primary Ca2+ sensor for synchronous neurotransmitter release (Zhou 2023).  Other isoforms of the synaptotagmin family as well as other C2 proteins such as members of the double C2 domain protein family were found to act as Ca2+ sensors for different modes of neurotransmitter release. A new model, release-of-inhibition, for the initiation of Ca2+-triggered synchronous neurotransmitter release has been proposed. Synaptotagmin1 binds Ca2+ via its two C2 domains and relieves a primed pre-fusion machinery. Before Ca2+ triggering, synaptotagmin1 interacts Ca2+ independently with partially zippered SNARE complexes, the plasma membrane, phospholipids, and other components to form a primed pre-fusion state that is ready for fast release. However, membrane fusion is inhibited until the arrival of Ca2+ reorients the Ca2+-binding loops of the C2 domain to perturb the lipid bilayers, help bridge the membranes, and/or induce membrane curvatures, which serves as a power stroke to activate fusion (Zhou 2023).  Synaptobrevin2 (Syb2) monomers and dimers differentially engage in regulating the trans-SNARE assembly during membrane fusion. The differential recruitment of two syb2 structures at the membrane fusion site has consequences in regulating individual nascent fusion pore properties. A few syb2 transmembrane domain residues control monomer/dimer conversion. Thus, syb2 monomers and dimers are differentially recruited at the release sites for regulating membrane fusion events (Patil et al. 2024).  

Accession Number:Q12846
Protein Name:Syntaxin-4 aka STX4
Length:297
Molecular Weight:34180.00
Species:Homo sapiens (Human) [9606]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell membrane1 / Single-pass type IV membrane protein2
Substrate

Cross database links:

RefSeq: NP_004595.2   
Entrez Gene ID: 6810   
Pfam: PF05739    PF00804   
OMIM: 186591  gene
KEGG: hsa:6810   

Gene Ontology

GO:0016323 C:basolateral plasma membrane
GO:0009986 C:cell surface
GO:0005829 C:cytosol
GO:0016021 C:integral to membrane
GO:0001950 C:plasma membrane enriched fraction
GO:0042581 C:specific granule
GO:0005773 C:vacuole
GO:0005484 F:SNAP receptor activity
GO:0006886 P:intracellular protein transport
GO:0006892 P:post-Golgi vesicle-mediated transport

References (8)

[1] “Isolation and sequence analysis of the human syntaxin-encoding gene.”  Li H.et.al.   8206394
[2] “Insulin-responsive tissues contain the core complex protein SNAP-25 (synaptosomal-associated protein 25) A and B isoforms in addition to syntaxin 4 and synaptobrevins 1 and 2.”  Jagadish M.N.et.al.   8760387
[3] “Co-expression of several human syntaxin genes in neutrophils and differentiating HL-60 cells: variant isoforms and detection of syntaxin 1.”  Martin-Martin B.et.al.   10080545
[4] “Complete sequencing and characterization of 21,243 full-length human cDNAs.”  Ota T.et.al.   14702039
[5] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).”  The MGC Project Teamet.al.   15489334
[6] “Antigens recognized by autologous antibody in patients with renal-cell carcinoma.”  Scanlan M.J.et.al.   10508479
[7] “A quantitative atlas of mitotic phosphorylation.”  Dephoure N.et.al.   18669648
[8] “An extensive survey of tyrosine phosphorylation revealing new sites in human mammary epithelial cells.”  Heibeck T.H.et.al.   19534553

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MRDRTHELRQ GDDSSDEEDK ERVALVVHPG TARLGSPDEE FFHKVRTIRQ TIVKLGNKVQ 
61:	ELEKQQVTIL ATPLPEESMK QELQNLRDEI KQLGREIRLQ LKAIEPQKEE ADENYNSVNT 
121:	RMRKTQHGVL SQQFVELINK CNSMQSEYRE KNVERIRRQL KITNAGMVSD EELEQMLDSG 
181:	QSEVFVSNIL KDTQVTRQAL NEISARHSEI QQLERSIREL HDIFTFLATE VEMQGEMINR 
241:	IEKNILSSAD YVERGQEHVK TALENQKKAR KKKVLIAICV SITVVLLAVI IGVTVVG