TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


3.D.1.3.1
NADH Dehydrogenase, NDH (Baradaran et al. 2013).  The x-ray structures of various complexes have been solved, and a coupling mechanism involving long range conformational changes has been proposed (Sazanov et al. 2013). The complex includes 16 subunits with nine iron-sulfur clusters, reduced by electrons from NADH. Employing the latest crystal structure of T. thermophilus complex I, Gupta et al. 2020 used microsecond-scale molecular dynamics simulations to study the chemo-mechanical coupling between redox changes of the iron-sulfur clusters and conformational transitions across complex I. The simulations revealed the molecular design principles linking redox reactions to quinone turnover and proton translocation in complex I. Using a zebrafish model of TB infection, Roca et al. 2022 found that tumor necrosis factor (TNF) induces reverse electron transport (RET) in mitochondrial complex I. This in turn drives the production of mitochondrial reactive oxygen species (mROS), causing macrophage necrosis. The complex I inhibitor metformin could be repurposed to inhibit TNF-induced mROS and necrosis in infected zebrafish and human macrophages, suggesting that this common antidiabetes drug may also be a useful adjunct therapy for TB (Roca et al. 2022).

Accession Number:Q56227
Protein Name:Nqo12
Length:606
Molecular Weight:65141.00
Species:Thermus thermophilus [300852]
Number of TMSs:17
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate hydron

Cross database links:

RefSeq: YP_143361.1   
Entrez Gene ID: 3169613   
Pfam: PF00361    PF00662   
BioCyc: TTHE300852:TTHA0095-MONOMER   
KEGG: ttj:TTHA0095   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0008137 F:NADH dehydrogenase (ubiquinone) activity
GO:0048038 F:quinone binding
GO:0042773 P:ATP synthesis coupled electron transport

References (1)

[1] “The proton-translocating NADH-quinone oxidoreductase (NDH-1) of thermophilic bacterium Thermus thermophilus HB-8. Complete DNA sequence of the gene cluster and thermostable properties of the expressed NQO2 subunit.”  Yano T.et.al.   9020134
Structure:
4HE8   4HEA   6I0D   6I1P   6Q8O   6Q8W   6Q8X   6Y11   6ZIY   6ZJL   [...more]

External Searches:

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MALLGTILLP LLGFALLGLF GKRMREPLPG VLASGLVLAS FLLGAGLLLS GGARFQAEWL 
61:	PGIPFSLLLD NLSGFMLLIV TGVGFLIHVY AIGYMGGDPG YSRFFAYFNL FIAMMLTLVL 
121:	ADSYPVMFIG WEGVGLASFL LIGFWYKNPQ YADSARKAFI VNRIGDLGFM LGMAILWALY 
181:	GTLSISELKE AMEGPLKNPD LLALAGLLLF LGAVGKSAQI PLMVWLPDAM AGPTPVSALI 
241:	HAATMVTAGV YLIARSSFLY SVLPDVSYAI AVVGLLTAAY GALSAFGQTD IKKIVAYSTI 
301:	SQLGYMFLAA GVGAYWVALF HVFTHAFFKA LLFLASGSVI HALGGEQDVR KMGGLWKHLP 
361:	QTRWHALIGA LALGGLPLLS GFWSKDAILA ATLTYPFGGV GFYVGALLVA VLTAMYAMRW 
421:	FVLVFLGEER GHHHPHEAPP VMLWPNHLLA LGSVLAGYLA LPHPLPNVLE PFLKPALAEV 
481:	EAHHLSLGAE WGLIALSAAV ALLGLWAGFV FFQRKVFPAW YLAFEAASRE AFYVDRAYNA 
541:	LIVNPLKALA EALFYGDRGL LSGYFGLGGA ARSLGQGLAR LQTGYLRVYA LLFVLGALLL 
601:	LGVMRW