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3.D.1.3.1
NADH Dehydrogenase, NDH (Baradaran et al. 2013).  The x-ray structures of various complexes have been solved, and a coupling mechanism involving long range conformational changes has been proposed (Sazanov et al. 2013). The complex includes 16 subunits with nine iron-sulfur clusters, reduced by electrons from NADH. Employing the latest crystal structure of T. thermophilus complex I, Gupta et al. 2020 used microsecond-scale molecular dynamics simulations to study the chemo-mechanical coupling between redox changes of the iron-sulfur clusters and conformational transitions across complex I. The simulations revealed the molecular design principles linking redox reactions to quinone turnover and proton translocation in complex I. Using a zebrafish model of TB infection, Roca et al. 2022 found that tumor necrosis factor (TNF) induces reverse electron transport (RET) in mitochondrial complex I. This in turn drives the production of mitochondrial reactive oxygen species (mROS), causing macrophage necrosis. The complex I inhibitor metformin could be repurposed to inhibit TNF-induced mROS and necrosis in infected zebrafish and human macrophages, suggesting that this common antidiabetes drug may also be a useful adjunct therapy for TB (Roca et al. 2022).

Accession Number:Q56228
Protein Name:Nqo13
Length:469
Molecular Weight:49219.00
Species:Thermus thermophilus [300852]
Number of TMSs:13
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate hydron

Cross database links:

RefSeq: YP_143362.1   
Entrez Gene ID: 3169618   
Pfam: PF00361   
BioCyc: TTHE300852:TTHA0096-MONOMER   
KEGG: ttj:TTHA0096   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0008137 F:NADH dehydrogenase (ubiquinone) activity
GO:0048038 F:quinone binding
GO:0042773 P:ATP synthesis coupled electron transport

References (1)

[1] “The proton-translocating NADH-quinone oxidoreductase (NDH-1) of thermophilic bacterium Thermus thermophilus HB-8. Complete DNA sequence of the gene cluster and thermostable properties of the expressed NQO2 subunit.”  Yano T.et.al.   9020134
Structure:
4HE8   4HEA   6I0D   6I1P   6Q8O   6Q8W   6Q8X   6Y11   6ZIY   6ZJL   [...more]

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MVVLAVLLPV VFGALLLLGL PRALGVLGAG LSFLLNLYLF LTHPGGVAHA FQAPLLPGAG 
61:	VYWAFGLDGL SALFFLTIAL TVFLGALVAR VEGRFLGLAL LMEGLLLGLF AARDLLVFYV 
121:	FFEAALIPAL LMLYLYGGEG RTRALYTFVL FTLVGSLPML AAVLGARLLS GSPTFLLEDL 
181:	LAHPLQEEAA FWVFLGFALA FAIKTPLFPL HAWLPPFHQE NHPSGLADAL GTLYKVGVFA 
241:	FFRFAIPLAP EGFAQAQGLL LFLAALSALY GAWVAFAAKD FKTLLAYAGL SHMGVAALGV 
301:	FSGTPEGAMG GLYLLAASGV YTGGLFLLAG RLYERTGTLE IGRYRGLAQS APGLAALALI 
361:	LFLAMVGLPG LSGFPGEFLT LLGAYKASPW LAALAFLSVI ASAAYALTAF QKTFWEEGGS 
421:	GVKDLAGAEW GFALLSVLAL LLMGVFPGYF ARGLHPLAEA FAKLLGGGA