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3.A.1.1.50
Probable glycerophosphocholine (GPC) uptake porter (Chandravanshi et al. 2016). The system may include a receptor and three membrane proteins (of 378 aas and 6 TMSs, 299 aas and 7 TMSs, and 113 aas and 3 TMSs (?). The ATPase has not been identified.

Accession Number:Q5SLB7
Protein Name:Sugar ABC transporter, permease protein
Length:113
Molecular Weight:12038.00
Species:Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [300852]
Number of TMSs:3
Substrate glycerophosphocholine

Cross database links:

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MAVSRTSVHI LPILGPPAIL RQGMRTYPLH WVLGVGVLLA LGLYAQRLGF LPAWAAWGLW 
61:	AGYLLLALWG LLWGGWRAAP LALGLLAPLF PPLAFLGPLG AALALGRTLP EKA