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1.A.9.4.2
Glutamate-gated chloride channel (GluClα or Glc-1) (α-subunits when mutated confer resistance to the antiparisitic drug, avermectin (ivermectin) (Dent et al., 2000)). A naturally occurring 4-aa deletion in the ligand binding domain of Glc-1 confers resistance to avermectin (Ghosh et al., 2012). Several 3-d structures are known (3RIF; Hibbs and Gouaux, 2011). Ivermectin (avermectin; IVM), an anthelmintic drug, inhibits neuronal activity and muscular contractility in arthropods and nematodes, activating glutamate-gated chloride channels at nanomolar concentrations (Lynagh and Lynch, 2012; Calimet et al. 2013; Degani-Katzav et al. 2017). Ivermectin resistance has been studied in Haemonchus contortus (the Barber pole worm) leading to the conclusion that mutations to ivermectin resistance affected the intrinsic properties of the receptor with no specific effect on IVM binding (Atif et al. 2017). Glutamate binding triggers a rapidly reversible current in heteromeric channels formed by Glc-1 and Glc-2, while the anti-helmintic drug ivermectin and other avermectins trigger a permanently open channel configuration. Channels containing only Glc-1 are activated by ivermectin, but not by glutamate alon, and Glutamate binding triggers a rapidly reversible current in heteromeric channels formed by Glc-1 and Glc-2, while the anti-helmintic drug ivermectin and other avermectins including ibotenate trigger a permanently open channel configuration. Channels containing only Glc-1 are activated by ivermectin, but not by glutamate alone. The channel is blocked by picrotoxin and flufenamic acid (Cully et al. 1994; Das and Dillon 2005). A database of glutamate-gated chloride (GluCl) subunits across 125 nematode species reveals patterns of gene accretion and sequence diversification (O'Halloran 2022). The gene encoding this protein is expressed at varying levels in response to the presence of ivermectin (Dube et al. 2023).

Accession Number:Q9TW41
Protein Name:Putative uncharacterized protein avr-15
Length:657
Molecular Weight:74716.00
Species:Caenorhabditis elegans [6239]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate chloride

Cross database links:

RefSeq: NP_001024076.1   
Entrez Gene ID: 179834   
Pfam: PF02931    PF02932   
KEGG: cel:R11G10.1   

Gene Ontology

GO:0030054 C:cell junction
GO:0016021 C:integral to membrane
GO:0045211 C:postsynaptic membrane
GO:0005230 F:extracellular ligand-gated ion channel acti...
GO:0006811 P:ion transport

References (1)

[1] “Genome sequence of the nematode C. elegans: a platform for investigating biology.”  The C. elegans sequencing consortiumet.al.   9851916

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MIGRLRRGFI LFPQLFLLFV SISSIFLFVL VECKPPKSLN RMRSKGTYNA AAFNSPSMIN 
61:	NGLLLAGFEN NDTSRETRES YEEYKDDIDH LLEGDLTFYD EGADTAAGDV VITSETPVEK 
121:	HKEVHFKNEP EEEEIGKEDD GGGEAEEGEY EEENGSDAEE EEESPEKVEP ATSTITTEAQ 
181:	TTTTPEEVTQ DVSDNIEDDE DARPKSEEHS PKHAASSSDL FEDDDQSTTL ESIARLSAPA 
241:	HVPIEQPQTS DTEILEHLLT RGYDHRVRPP GEDGTIHGGP VVVSVNMLLR SISKIDNVNM 
301:	EYSVQLTFRE SWVDKRLSFG VKGDAQPDFL ILTAGQEIWM PDSFFQNEKQ AYKHMIDKPN 
361:	VLIRVHKDGT ILYSVRISLV LSCPMHLQYY PMDVQQCFID LASYAYTTKD IEYVWKEETP 
421:	VQLKAGLSSS LPSFQLTNTS TTYCTSKTNT GSYSCLRTII QLRRQFSYYL LQLYIPSCML 
481:	VIVSWVSFWI DRTAVPARVT LGVTTLLTMT TQSSGINAKL PPVAYIKAID VWIGACMTFI 
541:	FCALLEFAWV TYIANKQDAN KRARTEREKA ELPFLQNSHN DVWVPREVAE QEREVMTVRM 
601:	NRRQTNSVWK WIKTKTEWND KSKRADLISR VMFPVLFLTF NISYWTHYGQ YGVAIST