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Accession Number: | O76090 |
Protein Name: | Bestrophin-1 aka VMD2 |
Length: | 585 |
Molecular Weight: | 67684.00 |
Species: | Homo sapiens (Human) [9606] |
Number of TMSs: | 4 |
Location1 / Topology2 / Orientation3: | Cell membrane1 / Multi-pass membrane protein2 |
Substrate | chloride, bromide, iodide, nitrate |
Cross database links:
RefSeq: | NP_001132915.1 NP_004174.1 |
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Entrez Gene ID: | 7439 |
Pfam: | PF01062 |
OMIM: |
153700 phenotype 153870 phenotype 193220 phenotype 607854 gene 608161 phenotype 611809 phenotype |
KEGG: | hsa:7439 |
Gene Ontology
GO:0016323
C:basolateral plasma membrane
GO:0034707
C:chloride channel complex
GO:0005829
C:cytosol
GO:0005624
C:membrane fraction
GO:0005254
F:chloride channel activity
GO:0050896
P:response to stimulus
GO:0030321
P:transepithelial chloride transport
GO:0007601
P:visual perception
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References (24)[1] “Mutations in a novel gene, VMD2, encoding a protein of unknown properties cause juvenile-onset vitelliform macular dystrophy (Best's disease).” Marquardt A.et.al. 9700209 [2] “Identification of the gene responsible for Best macular dystrophy.” Petrukhin K.et.al. 9662395 [3] “Structure-function analysis of the bestrophin family of anion channels.” Tsunenari T.et.al. 12907679 [4] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).” The MGC Project Teamet.al. 15489334 [5] “Complete sequencing and characterization of 21,243 full-length human cDNAs.” Ota T.et.al. 14702039 [6] “The vitelliform macular dystrophy protein defines a new family of chloride channels.” Sun H.et.al. 11904445 [7] “Bestrophin Cl- channels are highly permeable to HCO3-.” Qu Z.et.al. 18400985 [8] “Bestrophin gene mutations in patients with Best vitelliform macular dystrophy.” Caldwell G.M.et.al. 10331951 [9] “The mutation spectrum of the bestrophin protein -- functional implications.” Bakall B.et.al. 10394929 [10] “Evaluation of the Best disease gene in patients with age-related macular degeneration and other maculopathies.” Allikmets R.et.al. 10453731 [11] “A novel spontaneous missense mutation in VMD2 gene is a cause of a Best macular dystrophy sporadic case.” Palomba G.et.al. 10682987 [12] “Mutation analysis of 3 genes in patients with Leber congenital amaurosis.” Lotery A.J.et.al. 10766140 [13] “Allelic variation in the VMD2 gene in best disease and age-related macular degeneration.” Lotery A.J.et.al. 10798642 [14] “Identification of novel VMD2 gene mutations in patients with Best vitelliform macular dystrophy.” Marchant D.et.al. 11241846 [15] “Best's vitelliform macular dystrophy caused by a new mutation (Val89Ala) in the VMD2 gene.” Eksandh L.et.al. 11449320 [16] “Identification of a novel VMD2 mutation in Japanese patients with Best disease.” Yanagi Y.et.al. 12187431 [17] “Use of denaturing HPLC and automated sequencing to screen the VMD2 gene for mutations associated with Best's vitelliform macular dystrophy.” Marchant D.et.al. 12324875 [18] “Ten novel mutations in VMD2 associated with Best macular dystrophy (BMD).” Kraemer F.et.al. 14517959 [19] “Phenotype and genotype correlations in two best families.” Seddon J.M.et.al. 13129869 [20] “Gene Symbol: VMD2. Disease: Best vitelliform macular dystrophy (VMD2).” Li Y.et.al. 15176385 |
External Searches:
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Analyze:
Predict TMSs (Predict number of transmembrane segments) | ||||
FASTA formatted sequence |
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1: MTITYTSQVA NARLGSFSRL LLCWRGSIYK LLYGEFLIFL LCYYIIRFIY RLALTEEQQL 61: MFEKLTLYCD SYIQLIPISF VLGFYVTLVV TRWWNQYENL PWPDRLMSLV SGFVEGKDEQ 121: GRLLRRTLIR YANLGNVLIL RSVSTAVYKR FPSAQHLVQA GFMTPAEHKQ LEKLSLPHNM 181: FWVPWVWFAN LSMKAWLGGR IRDPILLQSL LNEMNTLRTQ CGHLYAYDWI SIPLVYTQVV 241: TVAVYSFFLT CLVGRQFLNP AKAYPGHELD LVVPVFTFLQ FFFYVGWLKV AEQLINPFGE 301: DDDDFETNWI VDRNLQVSLL AVDEMHQDLP RMEPDMYWNK PEPQPPYTAA SAQFRRASFM 361: GSTFNISLNK EEMEFQPNQE DEEDAHAGII GRFLGLQSHD HHPPRANSRT KLLWPKRESL 421: LHEGLPKNHK AAKQNVRGQE DNKAWKLKAV DAFKSAPLYQ RPGYYSAPQT PLSPTPMFFP 481: LEPSAPSKLH SVTGIDTKDK SLKTVSSGAK KSFELLSESD GALMEHPEVS QVRRKTVEFN 541: LTDMPEIPEN HLKEPLEQSP TNIHTTLKDH MDPYWALENR DEAHS