1.A.79.1.2 The human SIDT1 protein (Duxbury et al. 2005; Pratt et al. 2012). This protein as well as SidT2 may be cholesterol transporters (Méndez-Acevedo et al. 2017), although they are annotated as RNA transporters, in accordance with several earlier publications. Morreover, SIDT1 localizes to endolysosomes and mediates double-stranded RNA transport into the cytoplasm (Nguyen et al. 2019). SIDT1 plays a key role in type I IFN responses
to nucleic acids in plasmacytoid dendritic cells and mediates the
pathogenesis of an imiquimod-induced psoriasis model (Morell et al. 2022). SIDT1-dependent absorption in the stomach mediates host uptake of dietary and orally administered microRNAs (Chen et al. 2021). The structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1) has revealed the conformational flexibility of its lipid binding domain (Navratna et al. 2023). Several subgroups of the family have been identified as cognate endopeptidases for four protein-sorting signals processed by a previously unknown machinery. Sorting signals with newly identified processing enzymes include MYXO-CTERM and three novel ones (Haft 2024). N-glycosylation is required for its functional role in SIDT1-mediated RNA uptake (Yang et al. 2024). The structure of recombinant human SIDT1 has been solved revealing that the
extra-cytosolic domain of hSIDT1 adopts a double jelly roll fold, and
the transmembrane domain exists as two modules - a flexible lipid binding
domain and a rigid transmembrane domain core. These structural analyses
provide insights into the inherent conformational dynamics within the
lipid binding domain in ChUP family members (Navratna et al. 2024). Cryo-EM analysis revealed that human SID-1 transmembrane family member 1 dynamics underlie lipid hydrolytic activity (Hirano et al. 2024). Cryo-EM structures of human SID-1 reveal implications for their
low-pH-dependent RNA transport activity (Zheng et al. 2024). New structure-dynamic clues underlie the regulatory diversity among tissue-specific NCX variants (Giladi et al. 2024). N-glycosylation plays a functional role in SIDT1-mediated RNA uptake (Yang et al. 2024).
|
Accession Number: | Q9NXL6 |
Protein Name: | SID1 transmembrane family member 1 |
Length: | 827 |
Molecular Weight: | 93839.00 |
Species: | Homo sapiens (Human) [9606] |
Number of TMSs: | 11 |
Location1 / Topology2 / Orientation3: |
Membrane1 / Multi-pass membrane protein2 |
Substrate |
cholesterol, double-stranded RNA |
---|
RefSeq: |
NP_060169.2
|
Entrez Gene ID: |
54847
|
OMIM: |
606816 gene
|
KEGG: |
hsa:54847
hsa:54847
|
|
[1] “Complete sequencing and characterization of 21,243 full-length human cDNAs.” Ota T. et.al. 14702039
[2] “The DNA sequence, annotation and analysis of human chromosome 3.” Muzny D.M. et.al. 16641997
[3] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).” The MGC Project Team et.al. 15489334
[4] “Complete sequencing and characterization of 21,243 full-length human cDNAs.” Ota T. et.al. 14702039
[5] “The DNA sequence, annotation and analysis of human chromosome 3.” Muzny D.M. et.al. 16641997
[6] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).” The MGC Project Team et.al. 15489334
|
1: MRGCLRLALL CALPWLLLAA SPGHPAKSPR QPPAPRRDPF DAARGADFDH VYSGVVNLST
61: ENIYSFNYTS QPDQVTAVRV YVNSSSENLN YPVLVVVRQQ KEVLSWQVPL LFQGLYQRSY
121: NYQEVSRTLC PSEATNETGP LQQLIFVDVA SMAPLGAQYK LLVTKLKHFQ LRTNVAFHFT
181: ASPSQPQYFL YKFPKDVDSV IIKVVSEMAY PCSVVSVQNI MCPVYDLDHN VEFNGVYQSM
241: TKKAAITLQK KDFPGEQFFV VFVIKPEDYA CGGSFFIQEK ENQTWNLQRK KNLEVTIVPS
301: IKESVYVKSS LFSVFIFLSF YLGCLLVGFV HYLRFQRKSI DGSFGSNDGS GNMVASHPIA
361: ASTPEGSNYG TIDESSSSPG RQMSSSDGGP PGQSDTDSSV EESDFDTMPD IESDKNIIRT
421: KMFLYLSDLS RKDRRIVSKK YKIYFWNIIT IAVFYALPVI QLVITYQTVV NVTGNQDICY
481: YNFLCAHPLG VLSAFNNILS NLGHVLLGFL FLLIVLRRDI LHRRALEAKD IFAVEYGIPK
541: HFGLFYAMGI ALMMEGVLSA CYHVCPNYSN FQFDTSFMYM IAGLCMLKLY QTRHPDINAS
601: AYSAYASFAV VIMVTVLGVV FGKNDVWFWV IFSAIHVLAS LALSTQIYYM GRFKIDLGIF
661: RRAAMVFYTD CIQQCSRPLY MDRMVLLVVG NLVNWSFALF GLIYRPRDFA SYMLGIFICN
721: LLLYLAFYII MKLRSSEKVL PVPLFCIVAT AVMWAAALYF FFQNLSSWEG TPAESREKNR
781: ECILLDFFDD HDIWHFLSAT ALFFSFLVLL TLDDDLDVVR RDQIPVF