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1.A.79.1.2
The human SIDT1 protein (Duxbury et al. 2005; Pratt et al. 2012). This protein as well as SidT2 may be cholesterol transporters (Méndez-Acevedo et al. 2017), although they are annotated as RNA transporters, in accordance with several earlier publications. Morreover, SIDT1 localizes to endolysosomes and mediates double-stranded RNA transport into the cytoplasm (Nguyen et al. 2019). SIDT1 plays a key role in type I IFN responses to nucleic acids in plasmacytoid dendritic cells and mediates the pathogenesis of an imiquimod-induced psoriasis model (Morell et al. 2022). SIDT1-dependent absorption in the stomach mediates host uptake of dietary and orally administered microRNAs (Chen et al. 2021). The structure of the human systemic RNAi defective transmembrane protein 1 (hSIDT1) has revealed the conformational flexibility of its lipid binding domain (Navratna et al. 2023).  Several subgroups of the family have been identified as cognate endopeptidases for four protein-sorting signals processed by a previously unknown machinery. Sorting signals with newly identified processing enzymes include MYXO-CTERM and three novel ones (Haft 2024).  N-glycosylation is required for its functional role in SIDT1-mediated RNA uptake (Yang et al. 2024). The structure of recombinant human SIDT1 has been solved revealing that the extra-cytosolic domain of hSIDT1 adopts a double jelly roll fold, and the transmembrane domain exists as two modules - a flexible lipid binding domain and a rigid transmembrane domain core. These structural analyses provide insights into the inherent conformational dynamics within the lipid binding domain in ChUP family members (Navratna et al. 2024).  Cryo-EM analysis revealed that human SID-1 transmembrane family member 1 dynamics underlie lipid hydrolytic activity (Hirano et al. 2024). Cryo-EM structures of human SID-1 reveal implications for their low-pH-dependent RNA transport activity (Zheng et al. 2024). New structure-dynamic clues underlie the regulatory diversity among tissue-specific NCX variants (Giladi et al. 2024). N-glycosylation plays a functional role in SIDT1-mediated RNA uptake (Yang et al. 2024).  

Accession Number:Q9NXL6
Protein Name:SID1 transmembrane family member 1
Length:827
Molecular Weight:93839.00
Species:Homo sapiens (Human) [9606]
Number of TMSs:11
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate cholesterol, double-stranded RNA

Cross database links:

RefSeq: NP_060169.2   
Entrez Gene ID: 54847   
OMIM: 606816  gene
KEGG: hsa:54847    hsa:54847   

Gene Ontology

GO:0016021 C:integral to membrane

References (6)

[1] “Complete sequencing and characterization of 21,243 full-length human cDNAs.”  Ota T.et.al.   14702039
[2] “The DNA sequence, annotation and analysis of human chromosome 3.”  Muzny D.M.et.al.   16641997
[3] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).”  The MGC Project Teamet.al.   15489334
[4] “Complete sequencing and characterization of 21,243 full-length human cDNAs.”  Ota T.et.al.   14702039
[5] “The DNA sequence, annotation and analysis of human chromosome 3.”  Muzny D.M.et.al.   16641997
[6] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).”  The MGC Project Teamet.al.   15489334

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MRGCLRLALL CALPWLLLAA SPGHPAKSPR QPPAPRRDPF DAARGADFDH VYSGVVNLST 
61:	ENIYSFNYTS QPDQVTAVRV YVNSSSENLN YPVLVVVRQQ KEVLSWQVPL LFQGLYQRSY 
121:	NYQEVSRTLC PSEATNETGP LQQLIFVDVA SMAPLGAQYK LLVTKLKHFQ LRTNVAFHFT 
181:	ASPSQPQYFL YKFPKDVDSV IIKVVSEMAY PCSVVSVQNI MCPVYDLDHN VEFNGVYQSM 
241:	TKKAAITLQK KDFPGEQFFV VFVIKPEDYA CGGSFFIQEK ENQTWNLQRK KNLEVTIVPS 
301:	IKESVYVKSS LFSVFIFLSF YLGCLLVGFV HYLRFQRKSI DGSFGSNDGS GNMVASHPIA 
361:	ASTPEGSNYG TIDESSSSPG RQMSSSDGGP PGQSDTDSSV EESDFDTMPD IESDKNIIRT 
421:	KMFLYLSDLS RKDRRIVSKK YKIYFWNIIT IAVFYALPVI QLVITYQTVV NVTGNQDICY 
481:	YNFLCAHPLG VLSAFNNILS NLGHVLLGFL FLLIVLRRDI LHRRALEAKD IFAVEYGIPK 
541:	HFGLFYAMGI ALMMEGVLSA CYHVCPNYSN FQFDTSFMYM IAGLCMLKLY QTRHPDINAS 
601:	AYSAYASFAV VIMVTVLGVV FGKNDVWFWV IFSAIHVLAS LALSTQIYYM GRFKIDLGIF 
661:	RRAAMVFYTD CIQQCSRPLY MDRMVLLVVG NLVNWSFALF GLIYRPRDFA SYMLGIFICN 
721:	LLLYLAFYII MKLRSSEKVL PVPLFCIVAT AVMWAAALYF FFQNLSSWEG TPAESREKNR 
781:	ECILLDFFDD HDIWHFLSAT ALFFSFLVLL TLDDDLDVVR RDQIPVF