1.S.1.1.1 The PduA shell protein of 99 aas which forms a hexameric array with a pore in the array for diffusion of 1,2-propanediol but not propionaldehyde (Park et al. 2017). A serine that protrudes into the pore at the point of construction to form a hydrogen bond with propionaldehyde prevent it's free diffusion. Substrates enter these microcompartments by passing through the central
pores in hexameric assemblies of shell proteins. Limiting the escape of
toxic metabolic intermediates created inside the microcompartments confers a selective advantage for the host organism. The pore of the PduA hexamer has a lower energy barrier for passage of
the propanediol substrate compared to the toxic propionaldehyde
generated within the microcompartment (Park et al. 2017). PduA forms a selectively permeable pore tailored for the
influx of 1,2-propanediol
while restricting the efflux of propionaldehyde, a toxic intermediate of
1,2-propanediol catabolism (Chowdhury et al. 2015). The hexamer-hexamer interactions seen in PduA crystals persist in the
cytoplasmic structures and reveal the profound influence of the two key
amino acids, Lys-26 and Arg-79, on tiling, not only in the crystal
lattice but also in the bacterial cytoplasm (Pang et al. 2014). There are several shell proteins, PduA and PduT being two of them, and their crystal structures have been determined (Crowley et al. 2010). PduA forms a symmetric homohexamer whose central pore appears tailored
for facilitating transport of the 1,2-propanediol substrate. PduT is a
novel, tandem domain shell protein that assembles as a pseudohexameric
homotrimer. Its structure reveals an unexpected site for binding an
[Fe-S] cluster at the center of the PduT pore (Crowley et al. 2010). The location of a metal redox cofactor in the pore of a shell protein
suggests a novel mechanism for either transferring redox equivalents
across the shell or for regenerating luminal [Fe-S] clusters.It is a minor shell protein of the Salmonella enterica microcompartment (BMC) dedicated
to 1,2-propanediol (1,2-PD) degradation. The isolated BMC shell
component protein ratio for J:A:B':B:K:T:U is approximately
15:10:7:6:1:1:2 (Crowley et al. 2010). PduJ is 89% identical to PduA; PduB is protein 1.S.2.1.2; PduU is protein 1.S.2.3.1 in TCDB.
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Accession Number: | P0A1C7 |
Protein Name: | Propanediol utilization protein PduA |
Length: | 94 |
Molecular Weight: | 9592.00 |
Species: | Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) [99287] |
Substrate |
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1: MQQEALGMVE TKGLTAAIEA ADAMVKSANV MLVGYEKIGS GLVTVIVRGD VGAVKAATDA
61: GAAAARNVGE VKAVHVIPRP HTDVEKILPK GISQ