TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
2.A.15.1.1 | Glycine betaine:Na+ symporter (also transports dimethylsulfonioacetate and dimethylsulfoniopropionate) | Bacteria |
Bacillota | OpuD of Bacillus subtilis |
2.A.15.1.2 | Ectosine/glycine betaine/proline:Na+ symporter | Bacteria |
Actinomycetota | EctP of Corynebacterium glutamicum |
2.A.15.1.3 | Low affinity (0.9 mM), high efficiency, choline/glycine betaine:H+ symporter, BetT (Chen and Beattie, 2007). The choline-glycine betaine pathway plays an important role in bacterial survival in hyperosmotic environments. Osmotic activation of BetT promotes the uptake of external choline for synthesizing the osmoprotective glycine betaine. The cryo-EM structures of Pseudomonas syringae BetT in the apo and choline-bound states shows that BetT forms a domain-swapped trimer with the C-terminal domain (CTD) of one protomer interacting with the transmembrane domain (TMD) of a neighboring protomer (Yang et al. 2024). The substrate choline is bound within a tryptophan prism at the central part of the TMD. The results suggest that in Pseudomonas species, including the plant pathogen P. syringae and the human pathogen P. aeruginosa, BetT is locked at a low-activity state through CTD-mediated autoinhibition in the absence of osmotic stress, and its hyperosmotic activation involves the release of this autoinhibition (Yang et al. 2024). | Bacteria |
Pseudomonadota | BetT of Pseudomonas syringae (Q4ZLW8) |
2.A.15.1.4 | The high-affinity, proton- or sodium-driven, secondary symporter, BetT. The cytoplasmic C-terminal domain of plays a role in the regulation of BetT activity; C-terminal truncations cause BetT to be permanently locked in a low-transport-activity mode. (Tøndervik and Strøm 2007). | Bacteria |
Pseudomonadota | BetT of E. coli (P0ABC9) |
2.A.15.1.5 | Glycine-betaine/proline-betaine:Na+ symporter, BetS; BetT, OpuD (Kappes et al. 1996; Boscari et al. 2002; Ziegler et al. 2010). | Bacteria |
Pseudomonadota | BetS of Sinorhizobium meliloti (Q92WM0) |
2.A.15.1.6 | The glycine betaine, dimethylsulfoniopropionate:Na+ symporter (Ziegler et al., 2010). | Bacteria |
Pseudomonadota | Dddt of Psyohrobacter sp. J466 (D0U567) |
2.A.15.1.7 | The ectoine/glycine:Na+ symporter, LcoP (Ziegler et al., 2010). | Bacteria |
Actinomycetota | LcoP of Corynebacterium glutamicum (Q8NN75) |
2.A.15.1.8 | The ectoine/hydroxyectoine:Na+ symporter, EctT (Ziegler et al., 2010). | Bacteria |
Bacillota | EctT of Virgibacillus pantothenticus (Q93AK1) |
2.A.15.1.9 | High affinity glycine betaine uptake system | Bacteria |
Pseudomonadota | Glycine betaine transporter of Acinetobacter baylyi (Q6F754) |
2.A.15.1.10 | Glycine betaine transporter, BetP. BetP is a transporter with three different functions: betaine transport, osmosensing, and osmoregulation (Krämer and Morbach 2004). The x-ray structure is known (3PO3; 2WIT; Ressl et al., 2009). Regulatory crosstalk in the trimeric BetP has been reported (Gärtner et al., 2011). An extracellular K+ -dependent interaction site modulates betaine-binding (Ge et al., 2011). The porter is trimeric and exhibits structural asymmetry (Tsai et al., 2011). The C-terminal domain is involved in osmosensing and is trimeric like wild-type BetP. The two Na+ binding sites are between TMSs 1 and 8 in the first and second 5 TMS repeats, and between the equivalent TMSs 6 and 3 in the second and first repeats, respectively (Khafizov et al. 2012). interdependent binding of betaine and two sodium ions is observed during the coupling process. All three sites undergo progressive reshaping and dehydration during the alternating-access cycle, with the most optimal coordination of all substrates found in the closed state (Perez et al. 2014). BetP is active and regulated only when negatively charged lipids such as phosphatidyl glycerol are present, and the mechanism has been discussed (Güler et al. 2016). The K+-sensing C-terminal domain results in K+-dependent cooperative betaine-binding (Ge et al. 2011). BetP is a homotrimer lacking exact 3-fold symmetry. The observed differences may be due to crystal packing, or they may reflect different functional states of the transporter, related to osmosensing and osmoregulation (Ziegler et al. 2004). Intracellular K+ alters the conformation of the disordered C- and N-terminal domains to allosterically reconfigure TMSs 3, 8 and 10 to enhance betaine interactions. A map of the betaine binding site, at near single amino acid resolution, revealed a critical extrahelical H-bond mediated by TMS3 with betaine (Tantirimudalige et al. 2022). Hyperosmotic stress allosterically reconfigures the betaine binding pocket in BetP (Tantirimudalige et al. 2022). Both the N- and C-terminal (45 aas) segments participate in autoregulation, transducing changes in K+ concentrations as well as lipid bilayer properties to the integral membrane part of the protein. The C-terminal segment has short helical elements and an orientation that confines interactions (Leone et al. 2022). | Bacteria |
Actinomycetota | BetP of Corynebacterium glutamicum (P54582) |
2.A.15.1.11 | Glycine betaine transporter BetL (Glycine betaine-Na(+) symporter) | Bacteria |
Bacillota | BetL of Listeria monocytogenes |
2.A.15.1.12 | The glycine betaine transporter, BetH, of 505 aas and 12 TMSs (Lu et al. 2005). | Bacteria |
Bacillota | BetH of Halobacillus trueperi |
2.A.15.1.13 | Glycine betaine transporter, OpuD, of 520 aas and 12 TMSs. It may also transport proline, but with low affinity (Wetzel et al. 2011). It is a dominant proline uptake porter, the other being ProT (Lehman et al. 2023). | Bacteria |
Bacillota | OpuD of Staphylococcus aureus |
2.A.15.1.14 | Trimethylamine uptake transporter of 529 aas and 12 TMSs. Many microbes can utilize TMA as a carbon, nitrogen, and energy source (Gao et al. 2025). TmaT is an Na+/TMA symporter, which possessed high specificity and binding affinity toward TMA. Furthermore, the structures of TmaT and two TmaT-TMA complexes were solved by cryo-EM. TmaT forms a homotrimer structure in solution. Each TmaT monomer has 12 transmembrane helices, and the TMA transport channel is formed by a four-helix bundle. TMA can move between different aromatic boxes, which provides the structural basis of TmaT importing TMA. When TMA is bound in location I, residues Trp146, Trp151, Tyr154, and Trp326 form an aromatic box to accommodate TMA. Moreover, Met105 also plays an important role in the binding of TMA. When TMA is transferred to location II, it is bound in the aromatic box formed by Trp325, Trp326, and Trp329 (Gao et al. 2025). The volatile trimethylamine (TMA) plays an important role in promoting cardiovascular diseases and depolarizing olfactory sensory neurons in humans and serves as a key nutrient source for a variety of ubiquitous marine microbes. | Bacteria |
Pseudomonadati, Bacteroidota | TmaT of Myroides profundi |
2.A.15.2.1 | Carnitine:γ-butyrobetaine antiporter. The x-ray structure is known at 3.5 Å resolution (Schulze et al., 2010). The structure reveals a homotrimer where each protomer has 12 TMSs with 4 L-carnitine molecules outlining the pathway. There is a central binding site and another in the intracellular vestibule (Tang et al. 2010). | Bacteria |
Pseudomonadota | CaiT of E. coli (P31553) |
2.A.15.2.2 | The L-carnitine:γ-butyrobetaine antiporter, CaiT. The x-ray structure is known at 2.3 Å resolution (Schulze et al., 2010).
| Bacteria |
Pseudomonadota | CaiT of Proteus mirabilis (B4EY22)
|
2.A.15.2.3 | Uncharacterized transporter, YeaV, sometimes called CaiT, of 481 or 536 aas with 10 - 12 TMSs. | Bacteria |
Pseudomonadota | YeaV of Escherichia coli |