TCDB is operated by the Saier Lab Bioinformatics Group
« See all members of the family


2.A.41.2.8
Solute carrier family 28 member 3 (Concentrative Na+-nucleoside cotransporter 3) (CNT 3) (hCNT3).  This protein is distinct from TC# 2.A.41.2.6 (78% identity) although these two proteins are called Slc28a3 and CNT3 and have the same description in UniProt (see 2.A.41.2.6 for a more complete description).  hCNT3 can transport extracellular nucleosides and various nucleoside-derived anticancer drugs. Typical nucleoside anticancer drugs, including fludarabine, cladabine, decitabine, and clofarabine, are recognized by hCNT3 and then delivered to the lesion site for their therapeutic effects. hCNT3 is highly conserved during the evolution from lower to higher vertebrates, which contains scaffold and transport domains in structure and delivers substrates by coupling with Na+ and H+ ions in function. In the process of substrate delivery, the transport domain rises from the lower side of TMS9 in the inward conformation to the upper side of the outward conformation, accompanied by the collaborative motion of TMS7b/ TMS4b and hairpin 1b (HP1b)/HP2b. With the report of a series of three-dimensional structures of homologous CNTs, the structural characteristics and biological functions of hCNT3 hae become important. Yue et al. 2023 designed an anticancer lead compound with high hCNT3 transport potential based on the structure of 5-fluorouracil. The sequence evolution, conservation, molecular structure, cationic chelation, substrate recognition, elevator motion pattern and nucleoside derivative drugs of hCNT3 were reviewed, and the differences in hCNT3 transport mode and nucleoside anticancer drug modification were summarized (Yue et al. 2023).  The conformational trajectory of CNT3 during membrane transport of a nucleoside analog antiviral drug has been considered (Wright et al. 2024).

Accession Number:Q9HAS3
Protein Name:Solute carrier family 28 member 3
Length:691
Molecular Weight:76930.00
Species:Homo sapiens (Human) [9606]
Number of TMSs:13
Location1 / Topology2 / Orientation3: Membrane1 / Multi-pass membrane protein2
Substrate sodium(1+), nucleoside

Cross database links:

Entrez Gene ID: 64078   
Pfam: PF07670    PF07662    PF01773   
KEGG: hsa:64078   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0001882 F:nucleoside binding
GO:0015390 F:purine-specific nucleoside:sodium symporter activity
GO:0015389 F:pyrimidine- and adenine-specific:sodium symporter activity
GO:0015864 P:pyrimidine nucleoside transport
GO:0001895 P:retina homeostasis
GO:0055085 P:transmembrane transport

References (9)

[1] “Molecular identification and characterization of novel human and mouse concentrative Na+-nucleoside cotransporter proteins (hCNT3 and mCNT3) broadly selective for purine and pyrimidine nucleosides (system cib).”  Ritzel M.W.L.et.al.   11032837
[2] “Complete sequencing and characterization of 21,243 full-length human cDNAs.”  Ota T.et.al.   14702039
[3] “DNA sequence and analysis of human chromosome 9.”  Humphray S.J.et.al.   15164053
[4] “The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).”  The MGC Project Teamet.al.   15489334
[5] “Identification and functional characterization of variants in human concentrative nucleoside transporter 3, hCNT3 (SLC28A3), arising from single nucleotide polymorphisms in coding regions of the hCNT3 gene.”  Damaraju S.et.al.   15861042
[6] “Electrophysiological characterization and modeling of the structure activity relationship of the human concentrative nucleoside transporter 3 (hCNT3).”  Hu H.et.al.   16446384
[7] “Ribavirin uptake by cultured human choriocarcinoma (BeWo) cells and Xenopus laevis oocytes expressing recombinant plasma membrane human nucleoside transporters.”  Yamamoto T.et.al.   17140564
[8] “Functional analysis of genetic variants in the human concentrative nucleoside transporter 3 (CNT3; SLC28A3).”  Badagnani I.et.al.   15738947
[9] “Functional characterization of a nucleoside-derived drug transporter variant (hCNT3C602R) showing altered sodium-binding capacity.”  Errasti-Murugarren E.et.al.   17993510
Structure:
6KSW     

External Searches:

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MELRSTAAPR AEGYSNVGFQ NEENFLENEN TSGNNSIRSR AVQSREHTNT KQDEEQVTVE 
61:	QDSPRNREHM EDDDEEMQQK GCLERRYDTV CGFCRKHKTT LRHIIWGILL AGYLVMVISA 
121:	CVLNFHRALP LFVITVAAIF FVVWDHLMAK YEHRIDEMLS PGRRLLNSHW FWLKWVIWSS 
181:	LVLAVIFWLA FDTAKLGQQQ LVSFGGLIMY IVLLFLFSKY PTRVYWRPVL WGIGLQFLLG 
241:	LLILRTDPGF IAFDWLGRQV QTFLEYTDAG ASFVFGEKYK DHFFAFKVLP IVVFFSTVMS 
301:	MLYYLGLMQW IIRKVGWIML VTTGSSPIES VVASGNIFVG QTESPLLVRP YLPYITKSEL 
361:	HAIMTAGFST IAGSVLGAYI SFGVPSSHLL TASVMSAPAS LAAAKLFWPE TEKPKITLKN 
421:	AMKMESGDSG NLLEAATQGA SSSISLVANI AVNLIAFLAL LSFMNSALSW FGNMFDYPQL 
481:	SFELICSYIF MPFSFMMGVE WQDSFMVARL IGYKTFFNEF VAYEHLSKWI HLRKEGGPKF 
541:	VNGVQQYISI RSEIIATYAL CGFANIGSLG IVIGGLTSMA PSRKRDIASG AVRALIAGTV 
601:	ACFMTACIAG ILSSTPVDIN CHHVLENAFN STFPGNTTKV IACCQSLLSS TVAKGPGEVI 
661:	PGGNHSLYSL KGCCTLLNPS TFNCNGISNT F