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3.D.1.3.1
NADH Dehydrogenase, NDH (Baradaran et al. 2013).  The x-ray structures of various complexes have been solved, and a coupling mechanism involving long range conformational changes has been proposed (Sazanov et al. 2013). The complex includes 16 subunits with nine iron-sulfur clusters, reduced by electrons from NADH. Employing the latest crystal structure of T. thermophilus complex I, Gupta et al. 2020 used microsecond-scale molecular dynamics simulations to study the chemo-mechanical coupling between redox changes of the iron-sulfur clusters and conformational transitions across complex I. The simulations revealed the molecular design principles linking redox reactions to quinone turnover and proton translocation in complex I. Using a zebrafish model of TB infection, Roca et al. 2022 found that tumor necrosis factor (TNF) induces reverse electron transport (RET) in mitochondrial complex I. This in turn drives the production of mitochondrial reactive oxygen species (mROS), causing macrophage necrosis. The complex I inhibitor metformin could be repurposed to inhibit TNF-induced mROS and necrosis in infected zebrafish and human macrophages, suggesting that this common antidiabetes drug may also be a useful adjunct therapy for TB (Roca et al. 2022).

Accession Number:Q56223
Protein Name:Nqo3
Length:783
Molecular Weight:86529.00
Species:Thermus thermophilus [300852]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Cell membrane1 / Peripheral membrane protein2 / Cytoplasmic side3
Substrate hydron

Cross database links:

RefSeq: YP_143356.1   
Entrez Gene ID: 3168388   
Pfam: PF00111    PF04879    PF00384    PF01568    PF10588   
BioCyc: TTHE300852:TTHA0090-MONOMER   
KEGG: ttj:TTHA0090   

Gene Ontology

GO:0005886 C:plasma membrane
GO:0051537 F:2 iron, 2 sulfur cluster binding
GO:0051539 F:4 iron, 4 sulfur cluster binding
GO:0009055 F:electron carrier activity
GO:0030151 F:molybdenum ion binding
GO:0008137 F:NADH dehydrogenase (ubiquinone) activity
GO:0048038 F:quinone binding
GO:0042773 P:ATP synthesis coupled electron transport

References (4)

[1] “The proton-translocating NADH-quinone oxidoreductase (NDH-1) of thermophilic bacterium Thermus thermophilus HB-8. Complete DNA sequence of the gene cluster and thermostable properties of the expressed NQO2 subunit.”  Yano T.et.al.   9020134
[2] “Characterization of the iron-sulfur cluster coordinated by a cysteine cluster motif (CXXCXXXCX27C) in the Nqo3 subunit in the proton-translocating NADH-quinone oxidoreductase (NDH-1) of Thermus thermophilus HB-8.”  Nakamaru-Ogiso E.et.al.   11704668
[3] “Identification of a novel subunit of respiratory complex I from Thermus thermophilus.”  Hinchliffe P.et.al.   16584177
[4] “Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.”  Sazanov L.A.et.al.   16469879
Structure:
2FUG   3I9V   3IAM   3IAS   2YBB   3M9S   4HEA   6I0D   6I1P   6Q8O   [...more]

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MVRVKVNDRI VEVPPGTSVM DAVFHAGYDV PLFCSEKHLS PIGACRMCLV RIGLPKKGPD 
61:	GKPLLNEKGE PEIQWQPKLA ASCVTAVADG MVVDTLSDVV REAQAGMVEF TLLNHPLDCP 
121:	TCDKGGACEL QDRTVEYGLY EKYYQKGPLE LPVYTRFEFT RRHVDKHHPL SPFVILDRER 
181:	CIHCKRCVRY FEEVPGDEVL DFIERGVHTF IGTMDFGLPS GFSGNITDIC PVGALLDLTA 
241:	RFRARNWEME ETPTTCALCP VGCGITADTR SGELLRIRAR EVPEVNEIWI CDAGRFGHEW 
301:	ADQNRLKTPL VRKEGRLVEA TWEEAFLALK EGLKEARGEE VGLYLAHDAT LEEGLLASEL 
361:	AKALKTPHLD FQGRTAAPAS LFPPASLEDL LQADFALVLG DPTEEAPILH LRLSEFVRDL 
421:	KPPHRYNHGT PFADLQIKER MPRRTDKMAL FAPYRAPLMK WAAIHEVHRP GEEREILLAL 
481:	LGDKEGSEMV AKAKEAWEKA KNPVLILGAG VLQDTVAAER ARLLAERKGA KVLAMTPAAN 
541:	ARGLEAMGVL PGAKGASWDE PGALYAYYGF VPPEEALKGK RFVVMHLSHL HPLAERYAHV 
601:	VLPAPTFYEK RGHLVNLEGR VLPLSPAPIE NGEAEGALQV LALLAEALGV RPPFRLHLEA 
661:	QKALKARKVP EAMGRLSFRL KELRPKERKG AFYLRPTMWK AHQAVGKAQE AARAELWAHP 
721:	ETARAEALPE GAQVAVETPF GRVEARVVHR EDVPKGHLYL SALGPAAGLR VEGRVLVPAG 
781:	GEA