TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
8.A.16.1.1 | Calcium channel γ1-subunit, CACNG1 of 222 aas and 4 TMSs. Evolution of the family of gamma subunits has been presented and discussed (Burgess et al. 2001). Mutations in genes encoding proteins involved in ion channel function (including CACNG1) may be responsible for the aggressive behavior of a tumor (Sharma et al. 2019). | Eukaryota |
Metazoa | CACNG1 from Homo sapiens |
8.A.16.1.2 | Calcium channel γ6-subunit, CACNG6. Mediates inhibition of the low voltage-activated Cav3.1 channel by direct interaction involving a GxxxA motif in TMS1 (Lin et al. 2008). | Eukaryota |
Metazoa | CACNG6 from Homo sapiens |
8.A.16.2.1 | Transmembrane AMPA receptor (AMPAR) regulatory proteins, also called voltage-dependent Ca2+ channel γ2 subunits, TARPγ2, CACNG2, gamma-2 or Stargazin; regulate Ca(v)2.2 (TC# 1.A.1.11.19) as well as GIRK (TC# 1.A.2.1.3) (Tselnicker and Dascal 2010). TARPγ2 and TARPγ7 (8.A.16.2.5) can substitute for each other (Yamazaki et al. 2015). TARPs also enhance AMPAR function, altering ligand efficacy and receptor gating kinetics and shaping the postsynaptic response. Stargazin rescues gating deficiencies in AMPARs carrying mutations that destabilize the closed-cleft states of the ligand-binding domain (LBD), suggesting that stargazin stabilizes closed LBD states (MacLean et al. 2014). For Ca2+-permeable AMPARs, stargazin enhances receptor function by increasing single-channel conductance, slowing channel gating, increasing calcium permeability, and relieving the voltage-dependent block by endogenous intracellular polyamines (McGee et al. 2015). TARPs alter the conformations of pore-forming subunits and thereby affect antagonist interactions (Cokić and Stein 2008). By shifting the balance between AMPAR activation and desensitization, TARPs markedly facilitate the transduction of spillover-mediated synaptic signaling (Coombs et al. 2017). Stargazin plays a role in AMPA receptor trafficking through the early compartments of the biosynthetic pathway (Vandenberghe et al. 2005). Stargazin in complex with PSD-95 or PSD-95-assembled postsynaptic complexes form highly concentrated and dynamic condensates via phase separation, reminiscent of stargazin/PSD-95-mediated AMPAR synaptic clustering and trapping (Zeng et al. 2019). Positive allosteric modulators (PAMs) of AMPA receptors boost cognitive performance in clinical studies, and mibampator and BIIB104 discriminate between AMPARs complexed with distinct TARPs, and particularly those with lower stargazin/gamma2 efficacy such as BIIB104 (Ishii et al. 2020). TARPs modulate receptor-mediated paired-pulse depression and recovery from desensitization (Devi et al. 2020). The influence of the TARP gamma8-selective negative allosteric modulator JNJ-55511118 on AMPA receptor gating and channel conductance has been studied (Coombs et al. 2022). Aberrant hippocampal transmission and behavior in mice with a stargazin mutation has been linked to intellectual disability (Caldeira et al. 2022). | Eukaryota |
Metazoa | CACNG2 of Homo sapiens (Q9Y698) |
8.A.16.2.2 | Voltage-dependent Ca2+ channel γ3 subunit, CACNG3 | Eukaryota |
Metazoa | CACNG3 of Homo sapiens (O60359) |
8.A.16.2.3 | Voltage-dependent Ca2+ channel γ4 subunit, CACNG4 | Eukaryota |
Metazoa | CACNG4 of Homo sapiens (7656948) |
8.A.16.2.4 | Voltage dependent Ca2+ channel γ5 subunit, CACNG5 | Eukaryota |
Metazoa | CACNG5 of Mus musculus (Q8VHW4) |
8.A.16.2.5 | Voltage dependent Ca2+ channel γ7 (γ-7) subunit, CACNG7 or TARP γ7. Enhances synaptic expression and channel activity of Ca2+ permeable AMPA receptors (TC#1.A.10.1.1) (Studniarczyk et al. 2013; Kato et al. 2007). | Eukaryota |
Metazoa | CACNG7 of Homo sapiens (P62955) |
8.A.16.2.6 | Voltage dependent Ca2+ channel γ8 subunit, CACNG8 or TARP γ8, of 425 aas and 4 or 5 TMSs, interacts with calcineurin to regulate AMPA receptor phosphorylation and trafficking (Itakura et al. 2014). It regulates the activity of L-type calcium channels that contain CACNA1C as the pore-forming subunit (Shi et al. 2010). It also regulates the gating properties of AMPARs while promoting their targeting to the cell membrane and synapses and modulating their gating properties by slowing their rates of activation, deactivation and desensitization and by mediating their resensitization (Kato et al. 2010). It does not show subunit-specific AMPA receptor regulation and regulates all AMPAR subunits. TARP gamma8 is predominantly expressed in the forebrain and is enriched in the hippocampus, a region associated with temporal lobe epilepsy, and may allow development of refined AMPAR epilepsy therapeutics (Dohrke et al. 2020). SNP rs10420324 in the AMPA receptor auxiliary subunit TARP gamma-8 regulates the susceptibility to antisocial personality disorder (Peng et al. 2021). The TARP gamma8-selective negative allosteric modulator JNJ-55511118 influences AMPA receptor gating and channel conductance (Coombs et al. 2022). TARP gamma-8 regulates the AMPAR which mediates various brain functions including learning and memory, and it has been imaged (Yu et al. 2022). A deficiency of transmembrane AMPA receptor regulatory protein gamma-8 leads to attention-deficit hyperactivity disorder-like behavior in mice (Bai et al. 2022).
| Eukaryota |
Metazoa | CACNG8 of Homo sapiens (Q8WXS5) |
8.A.16.2.7 | The cataract-associated protein TMEM114 (222 aas) (Glycosylated) (Maher et al., 2011) | Eukaryota |
Metazoa | TMEM114 of Mus musculus (Q9D563) |
8.A.16.2.8 | Transmembrane protein 178 | Eukaryota |
Metazoa | TMEM178 of Homo sapiens |
8.A.16.2.9 | Claudin domain-containing protein 1 (Membrane protein GENX-3745) | Eukaryota |
Metazoa | CLDND1 of Homo sapiens |
8.A.16.2.10 | Voltage-dependent calcium channel gamma-8 subunit, a duplicated 8 TMS protein of 602 aas with two 4 TMS elements, with the first half belonging to subfamily 8.A.16.2 and the second half more similar to subfamily 8.A.16.1. | Eukaryota |
Metazoa | Voltage-dependent calcium channel gamma-8 subunit of Tupaia chinensis (Chinese tree shrew) |
8.A.16.2.11 | Voltage-dependent calcium channel gamma-6 subunit, a duplicated 8 TMS protein of 630 aas with two 4 TMS elements, the first half belonging to subfamily 8.A.16.2 and the second half more similar to subfamily 8.A.16.1. This protein and 8.A.16.2.10 have internal duplications and 8 TMSs instead of the usual 4 TMSs. | Eukaryota |
Metazoa | Voltage-dependent calcium channel gamma-6 subunit of Heterocephalus glaber (Naked mole rat) |
8.A.16.2.12 | TARP Cacng2a (Stargazin homologue) of 324 aas. Regulates the trafficking and gating properties of AMPA-selective glutamate receptors (AMPARs), promoting their targeting to the cell membrane and synapses and modulating their gating properties by slowing their rates of activation, deactivation and desensitization. Regulates all AMPAR subunits. Thought to stabilize the calcium channel in an inactivated (closed) state (Roy et al. 2016). | Eukaryota |
Metazoa | Cacng2a of Danio rerio (Zebrafish) (Brachydanio rerio) |
8.A.16.3.1 | Tetrameric tetraspanin MP20 (4 TMS scaffold protein; Gonen et al., 2007). Proteomics of the ocular lens revealed palmitoylation (Wang and Schey 2018). | Eukaryota |
Metazoa | Tetraspanin MP20 of Rattus norvegicus (P54825) |
8.A.16.3.2 | Uncharacterized protein of 273 aas and 4 TMSs. According to Pfam, it belongs to the Claudin2 superfamily. | TMEM202 homologue of Homo sapiens (Human) | ||
8.A.16.4.1 | Invertebrate claudin-like cell junctional protein, Vab-1, of 211 aas and 4 TMSs. Regulates cell adhesion, intercellular signalling, cell morphology and paracellular small molecule passage (Simske and Hardin 2011). | Eukaryota |
Metazoa | Vab-1 of Caenorhabditis elegans |
8.A.16.4.2 | Uncharacterized protein of 198 aas and 4 TMSs | Eukaryota |
Metazoa | UP of Capitella teleta (Polychaete worm) |
8.A.16.4.3 | p53 apoptosis effector, related to PMP-22, PERP, PCP1, KRTCAP1, PIGPC1, THW, of 193 aas and 4 TMSs in a 1 + 3 TMS arrangement (Attardi et al. 2000). | Eukaryota |
Metazoa | PERP of Homo sapiens |
8.A.16.4.4 | TMEM47; BCMP1; TM4SF10 of 181 aas and 4 TMSs. It regulates cell junction organization in epithelial cells and may play a role in the transition from adherens junction to tight junction assembly. It is a possible biomarkers for accurate identification of mesenchymal stromal cells (Brinkhof et al. 2020)
| Eukaryota |
Metazoa | TMEM47 of Homo sapiens |
8.A.16.5.1 | Germ cell-specific gene 1 protein of 349 aas and 4 TMSs, GSG1. | Eukaryota |
Metazoa | GSG1 of Homo sapiens |
8.A.16.5.2 | Uncharacterized protein of 245 aas and 4 TMSs. | Eukaryota |
Metazoa | UP of Branchiostoma floridae (Florida lancelet) |
8.A.16.5.3 | Germ cell-specific gene-1-like (GSG1L) protein of 331 aas and 4 TMS in a 1 (N-terminal) + 3 TMS arrangement. Calcium-permeable AMPA receptors (TC# 1.A.10) are specific for the neurotransmitter glutamate. They contribute to various forms of synaptic plasticity. Alterations in their expression or regulation are seen in a number of neurological conditions including stroke, motor neuron disease, and cocaine addiction. Several groups of auxiliary transmembrane proteins have been described that enhance the function and cell-surface expression of AMPARs, but GSG1L decreases channel conductance and calcium permeability while increasing polyamine-dependent rectification by diminishing outward current (McGee et al. 2015). GSG1L favors the AMPAR desensitized state, where channel closure is facilitated by large structural rearrangements in the AMPAR extracellular domain, with ligand-binding domain dimers losing their local 2-fold rotational symmetry. AMPAR auxiliary subunits probably share a modular architecture (Twomey et al. 2017). It may also be a subunit of AMPA receptors (Matthews et al. 2021). Alternative splicing of the flip/flop cassette and TARP auxiliary subunits engage in a privileged relationship that fine-tunes AMPA receptor gating (Perozzo et al. 2023). Inclusion of the spider toxin analogue 1‑naphthylacetyl spermine (NASPM) in the intracellular solution results in complete block of GluA1-mediated outward currents irrespective of the type of associated auxiliary subunit. In neurons from GluA2-knockout mice expressing only CP-AMPARs, intracellular NASPM, unlike spermine, completely blocks outward synaptic currents. Thus, Coombs et al. 2023 identified a functional measure of CP-AMPARs that is unaffected by their auxiliary subunit content. | Eukaryota |
Metazoa | GSG1L OF Homo sapiens |
8.A.16.6.1 | Voltage-dependent Ca2+ channel γ-like subunit (211 aas; 3 TMSs) (Klugbauer et al., 2000) | Eukaryota |
Metazoa | CcgL of Mus musculus (Q9JJV3) |