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9.B.104.1.1
GlpG rhomboid serine protease (276aas ; 6 TMSs; DUF3582; Structure known) (Vinothkumar, 2011; Wang et al. 2006). The requirements for cleavage have been defined (Akiyama and Maegawa 2007). The catalytic Ser201, is located at the N terminus of TMS 4, approximately 10 Å below the membrane surface. Access to water molecules is provided by a central cavity that opens to the extracellular region and converges on Ser201. One of the two GlpG molecules in the asymmetric unit has an open conformation at the active site, with TMS 5 bent away from the rest of the molecule. Substrate entry to the active site is probably gated by the movement of TMS 5 (Wu et al. 2006). Rhomboid proteases GlpG and Rhom7 are involved in membrane protein quality control by specifically targeting components of respiratory complexes. The metastable transmembrane domains of rhomboid substrates are protected when they are incorporated into a functional complex (Liu et al. 2020).

Accession Number:P09391
Protein Name:Rhomboid protease glpG
Length:276
Molecular Weight:31307.00
Species:Escherichia coli (strain K12) [83333]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Cell inner membrane1 / Multi-pass membrane protein2
Substrate protein polypeptide chain

Cross database links:

Entrez Gene ID: 947936   
Pfam: PF12122    PF01694   
KEGG: ecj:JW5687    eco:b3424   

Gene Ontology

GO:0016021 C:integral to membrane
GO:0005886 C:plasma membrane
GO:0004252 F:serine-type endopeptidase activity
GO:0006508 P:proteolysis

References (13)

[1] “Nucleotide sequence of the glpR gene encoding the repressor for the glycerol-3-phosphate regulon of Escherichia coli K12.”  Choi Y.-L.et.al.   3045764
[2] “Repressor for the sn-glycerol 3-phosphate regulon of Escherichia coli K-12: primary structure and identification of the DNA-binding domain.”  Zeng G.et.al.   8955387
[3] “The complete genome sequence of Escherichia coli K-12.”  Blattner F.R.et.al.   9278503
[4] “Escherichia coli K-12: a cooperatively developed annotation snapshot -- 2005.”  Riley M.et.al.   16397293
[5] “Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110.”  Hayashi K.et.al.   16738553
[6] “Structural analysis of a rhomboid family intramembrane protease reveals a gating mechanism for substrate entry.”  Wu Z.et.al.   17099694
[7] “Proteolytic action of GlpG, a rhomboid protease in the Escherichia coli cytoplasmic membrane.”  Maegawa S.et.al.   16216077
[8] “Global topology analysis of the Escherichia coli inner membrane proteome.”  Daley D.O.et.al.   15919996
[9] “Functional characterization of Escherichia coli GlpG and additional rhomboid proteins using an aarA mutant of Providencia stuartii.”  Clemmer K.M.et.al.   16621838
[10] “The intramembrane active site of GlpG, an E. coli rhomboid protease, is accessible to water and hydrolyses an extramembrane peptide bond of substrates.”  Maegawa S.et.al.   17493126
[11] “Crystal structure of a rhomboid family intramembrane protease.”  Wang Y.et.al.   17051161
[12] “Structural basis for intramembrane proteolysis by rhomboid serine proteases.”  Ben-Shem A.et.al.   17190827
[13] “Open-cap conformation of intramembrane protease GlpG.”  Wang Y.et.al.   17277078
Structure:
2IC8   2IRV   2LEP   2NRF   2O7L   2XOV   2XOW   2XTU   2XTV   3B44   [...more]

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MLMITSFANP RVAQAFVDYM ATQGVILTIQ QHNQSDVWLA DESQAERVRA ELARFLENPA 
61:	DPRYLAASWQ AGHTGSGLHY RRYPFFAALR ERAGPVTWVM MIACVVVFIA MQILGDQEVM 
121:	LWLAWPFDPT LKFEFWRYFT HALMHFSLMH ILFNLLWWWY LGGAVEKRLG SGKLIVITLI 
181:	SALLSGYVQQ KFSGPWFGGL SGVVYALMGY VWLRGERDPQ SGIYLQRGLI IFALIWIVAG 
241:	WFDLFGMSMA NGAHIAGLAV GLAMAFVDSL NARKRK