TCDB is operated by the Saier Lab Bioinformatics Group
TCIDNameDomainKingdom/PhylumProtein(s)
9.B.174.1.1









The C-terminal processing protease, CtpB (YvjB). Crystal structures reflecting distinct functional states show that CtpB constitutes a ring-like protein scaffold penetrated by two narrow tunnels. Access to the proteolytic sites sequestered within these tunnels is controlled by PDZ domains that rearrange upon substrate binding. Accordingly, CtpB resembles a minimal version of a self-compartmentalizing protease regulated by a unique allosteric mechanism (Mastny et al. 2013).  May show limited sequence similarity with 8.A.24.1.1.  The transmembrane domain serves as a receptor for the LsbB bacteriocin in Lactococcus lactis (Miljkovic et al. 2016).

Bacteria
Firmicutes
CtpB of Bacillus subtilis
9.B.174.1.2









Tail-specific protease, Prc or Tsp, of 682 aas and 1 N-terminal TMS.  Similar to 9.B.174.1.1 only in the central hydrophilic region. Prc, together with an outer membrane lipoprotein, NlpI, contributes to growth and enlargement of the peptidoglycan sacculus by modulating the cellular levels of the cross-link-cleaving hydrolase, MepS. It thus contributes to growth and enlargement of the PG sacculus (Singh et al. 2015).

Bacteria
Proteobacteria
Prc of E. coli
9.B.174.1.3









S41 family peptidase of 554 aas and one N-terminal TM

Bacteria
FCB group
Peptidase of Alistipes finegoldii
9.B.174.1.4









Carboxyl-terminal-processing peptidase 3, chloroplastic of 523 aas and 1 N-terminal TM

Eukaryota
Viridiplantae
Peptidase of Oryza sativa
9.B.174.2.1









S41 family peptidase of 377 aas with one N-terminal TMS.

Bacteria
Proteobacteria
UP of Sphingomonas sp. 35-24ZXX
9.B.174.2.2









Uncharacterized protein of 730 aas and 1 N-terminal TMS.  Only the C-terminal sequence is similar to other members of this family.

Bacteria
Proteobacteria
UP of Arsukibacterium ikkense
9.B.174.2.3









Interphotoreceptor retinoid binding protein, partial of 409 aa

Eukaryota
Opisthokonta
Retinoid BP of Abrawayaomys ruschii
9.B.174.2.4









Uncharacterized protein of 458 aas and one N-terminal TMS.

Bacteria
Proteobacteria
UP of Saccharibacter floricola
9.B.174.2.5









S41 family peptidase of 531 aas and 1 N-terminal TMS.

Bacteria
FCB group
S41 peptidase of Flavobacterium columnare