1.E.53 The Toxic Hok/Gef Protein (Hok/Gef) Family

Members of the Hok/Gef family include a number of small proteins (about 50 amino acid residues), including the highly similar Gef and RelA proteins of E. coli and several plasmid-encoded proteins such as Hok, FimA, SrnB and PndA (Poulsen et al. 1989). These cell-toxic proteins have N-terminal hydrophobic ''signal'' peptides which traverse the cytoplasmic membrane of the bacteria displaying their C-terminal domains in the periplasm (Poulsen et al. 1991). When overexpressed, these proteins are toxic, killing the bacterial cell from the inside, but their normal physiological functions were not known. They appear to mediate programmed cell death in bacteria, and they function in plasmid maintenance by killing plasmid-free cells via a toxin/unstable (protease-sensitive) antitoxin-dependent mechanism. Members of the Hok/Gef family are found in bacteria and archaea, and the E. coli chromosome encodes at least five hok gene paralogues. Gef forms disulfide-linked homodimers. It has been proposed that they oligomerize to form transmembrane channels or pores that dissipate the membrane potential and thereby kill the cell.  This conclusion has been substantiated (Brielle et al. 2016).

Hok-like proteins are very toxic to most Gram-negative species and also to some extent to Gram-positive bacteria (Gerdes et al. 1997). Induction of Hok leads to loss of the cell membrane potential, arrest of respiration, efflux of small molecules (i.e. Mg2+ and ATP), influx of small extracellular molecules (i.e. ONPG) and even influx of periplasmic proteins such as RNase I. By phase contrast microscopy, the cells change morphology to so-called ''ghost-cells'' after induction of Hok protein synthesis. These ghost cells are characterized by condensed cell poles and a centrally located clearing, and resemble the ghost cells (empty cell shells) formed after induction of the lysis gene of φx174. Furthermore, the srnB gene of F complements mutations in the φx174 BS gene , which encodes a holin. Thus the Hok family of proteins bears functional resemblance to holins (TC subclass 1.E). The holins create holes or pores in the inner cell membrane, thereby releasing a phage-encoded endolysin to the periplasm, where the enzyme degrades the cell wall. Thus, the Hok-like proteins kill the cells by mediating irreversible damage to the host cell membrane.


 

References:

Boulaiz, H., J. Prados, J.A. Marchal, A.M. García, L. Alvarez, C. Melguizo, E. Carrillo, J.L. Ramos, and A. Aránega. (2003). Transfection of MS-36 melanoma cells with gef gene inhibits proliferation and induces modulation of the cell cycle. Cancer Sci 94: 564-568.

Brielle, R., M.L. Pinel-Marie, and B. Felden. (2016). Linking bacterial type I toxins with their actions. Curr. Opin. Microbiol. 30: 114-121. [Epub: Ahead of Print]

Gerdes, K., A.P. Gultyaev, T. Franch, K. Pedersen, and N.D. Mikkelsen. (1997). Antisense RNA-regulated programmed cell death. Annu Rev Genet 31: 1-31.

Harms, A., E. Maisonneuve, and K. Gerdes. (2016). Mechanisms of bacterial persistence during stress and antibiotic exposure. Science 354:.

Poulsen, L.K., A. Refn, S. Molin, and P. Andersson. (1991). Topographic analysis of the toxic Gef protein from Escherichia coli. Mol. Microbiol. 5: 1627-1637.

Poulsen, L.K., N.W. Larsen, S. Molin, and P. Andersson. (1989). A family of genes encoding a cell-killing function may be conserved in all gram-negative bacteria. Mol. Microbiol. 3: 1463-1472.

Verstraeten, N., W.J. Knapen, C.I. Kint, V. Liebens, B. Van den Bergh, L. Dewachter, J.E. Michiels, Q. Fu, C.C. David, A.C. Fierro, K. Marchal, J. Beirlant, W. Versées, J. Hofkens, M. Jansen, M. Fauvart, and J. Michiels. (2015). Obg and Membrane Depolarization Are Part of a Microbial Bet-Hedging Strategy that Leads to Antibiotic Tolerance. Mol. Cell 59: 9-21.

Wilmaerts, D., M. Bayoumi, L. Dewachter, W. Knapen, J.T. Mika, J. Hofkens, P. Dedecker, G. Maglia, N. Verstraeten, and J. Michiels. (2018). The Persistence-Inducing Toxin HokB Forms Dynamic Pores That Cause ATP Leakage. MBio 9:.

Examples:

TC#NameOrganismal TypeExample
1.E.53.1.1

Toxic protein, HokC or Gef of the Hok/Gef family. When injected into melanoma cells, gef caused the appearance of pore-like structures in the cell membrane (Boulaiz et al. 2003).

Bacteria

HokC or Gef of E. coli (P0ACG4)

 
1.E.53.1.10

PndA of 43 aas

Enteric bacteria

PndA of E. coli

 
1.E.53.1.11

SrnB

Enteric bacteria

SrnB of E. coli

 
1.E.53.1.2

HokA toxic peptide

Enterobacteria

HokA of E. coli

 
1.E.53.1.3

Pore-forming toxic peptide, HokB (Brielle et al. 2016).  Involved in persistence, controlled by ppGpp (Harms et al. 2016).  Causes collapse of the membrane potential leading to dormancy and persistance (Verstraeten et al. 2015). The pore-forming activity leads to leakage of intracellular ATP, which correlates with the induction of persistence. There is a link between persistence and pore activity, as the number of HokB-induced persister cells was strongly reduced using a channel blocker (Wilmaerts et al. 2018).

Enterobacteria

HokB of E. coli

 
1.E.53.1.4

HokD of 70 aas

Enterobacteria

HokD of E. coli

 
1.E.53.1.5

HokE

Enterobacteria

HokE of Klebsiella oxytoca

 
1.E.53.1.6

HokG

Enterobacteria

HokG of Klebsiella oxytoca

 
1.E.53.1.7

Small toxic membrane protein, Stm of 71 aas

Enterobacteria

Stm of Salmonella enterica

 
1.E.53.1.8

Putative Hok protein of 69 aas

Enterobacteria

Putative Hok protein of Candidatus Regulla insecticola

 
1.E.53.1.9

Regulatory protein for HokC, MocC

Enteric bacteria

MocC of E. coli

 
Examples:

TC#NameOrganismal TypeExample
1.E.53.2.1

Hok/Gef family protein of 164 aas

Enterobacteria

Hok protein of E. coli

 
1.E.53.2.2

Uncharacterized protein of 128 aas and 1 - 4 TMSs.

UP of Bordetella pertussis

 
1.E.53.2.3

Tar ligand binding domain-containing protein, partial. of 72 aas and 1 TM

Tar ligand binding protein of Salmonella enterica

 
Examples:

TC#NameOrganismal TypeExample
1.E.53.3.1

Uncharacterized protein of 143 aas and 1 central TMS.

UP of Massilia aquatica