1.E.7 The HP1 Holin (HP1 Holin) Family

See 1.E for a generalized description of Holins.

The NucE protein in Serratia marcescens shows homology to phage holin proteins involved in releasing lysozyme to the peptidoglycan of Gram-negative bacteria. The protein contains two characteristic TMSs with a positively charged C-terminus. When the nucC operon carrying the nucEDC genes is placed in the Escherichia coli chromosome, NucE functions as a holin. Additionally, NucE can complement lysis-defective bacteriophage mutants to allow for plaque formation and release of phage. Although NucE can function as a holin it is not involved in the transport of nuclease, an extracellular protein encoded by the nucA gene.

The proteins of 1.E.7 show some sequence similarity with those of family 1.E.1



This family belongs to the Holin II Superfamily .

 

References:

Berkmen, M., M.J. Benedik, and U. Bläsi. (1997). The Serratia marcescens NucE protein functions as a holin in Escherichia coli. J. Bacteriol. 179: 6522-6524.

Jin, S., Y. Chen, G.E. Christie and M.J. Benedik (1996). Regulation of the Serratia marcescens extracellular nuclease: positive control by a homolog of P2 Ogr encoded by a cryptic prophage. J. Mol. Biol. 256: 264-278.

Strych U., W. Dai, and M.J. Benedik (1999). The NucE and NucD lysis proteins are not essential for secretion of the Serratia marcescens extracellular nuclease. Microbiology 145: 1209-1216.

Examples:

TC#NameOrganismal TypeExample
1.E.7.1.1

Holin of 78 aas and 1 - 3 TMSs.

Holin Haemophilus influenzae phage HP1; spP51727)

 
1.E.7.1.2

Holin of 74 aas and 1 TMS.

Proteobacteria

Holin of Haemophilus somnus

 
1.E.7.1.3

Holin of 68 aas and 1 TMS.

Holin of Mannheimia haemolytica

 
1.E.7.1.4

Holin of 75 aas and 1 TMS

Holin of Rodentibacter trehalosifermentans

 
Examples:

TC#NameOrganismal TypeExample
1.E.7.2.1

phage pg24 protein of 80 aas and 1 TMS

Phage

gp24 of Burkholderia phage phi644-2

 
1.E.7.2.2

Holin of 83 aas and 1 TMS.

Holin of Azomonas agilis

 
1.E.7.2.3

Holin of 96 aas and 1 TMS

Holin of Thauera butanivorans

 
1.E.7.2.4

Holin of 66 aas and 1 TMS

Holin of Siphoviridae sp. (Human Metagenome)

 
1.E.7.2.5

Holin of 80 aas and 1 TMS

Holin of Comamonas odontotermitis

 
1.E.7.2.6

Holin of 67 aas and 1 TMS

Holin of Enterobacter cloacae

 
1.E.7.2.7

Holin of 78 aas and 2 TMSs

Holin of Acinetobacter soli