1.S.4.  The Bacterial Microcompartment Shell/Pore-forming Protein-4 (BMC-SP4) Family

In the glycyl-radical propanediol (Grp) MCP, the BMC-domain shell proteins [bacterial microcompartment (in reference to the shell protein domain)] assemble to form a polyhedral barrier that encapsulates the enzymatic contents of the MCP. The Grp MCP contains a number of shell proteins with unusual sequence features. GrpU is one such shell protein whose amino acid sequence is particularly divergent from other members of the BMC-domain superfamily of proteins that effectively defines all MCPs. Expression, purification, and subsequent characterization of the protein showed that it binds an iron-sulfur cluster.  X-ray crystal structures of two GrpU orthologs provided structural insight into the homohexameric BMC-domain shell proteins of the Grp system. The X-ray structures show that the metal cluster resides in the central pore of the BMC shell protein at a position of broken 6-fold symmetry. The result is a structurally polymorphic iron-sulfur cluster binding site that appears to be unique among metalloproteins studied to date (Thompson et al. 2014).


 

References:

Thompson, M.C., N.M. Wheatley, J. Jorda, M.R. Sawaya, S.D. Gidaniyan, H. Ahmed, Z. Yang, K.N. McCarty, J.P. Whitelegge, and T.O. Yeates. (2014). Identification of a unique Fe-S cluster binding site in a glycyl-radical type microcompartment shell protein. J. Mol. Biol. 426: 3287-3304.

Examples:

TC#NameOrganismal TypeExample
1.S.4.1.1

Grp shell protein, GrpU, of 107 aas with 2 mildly hydrophobic regions centered at residues 40 and 75.  See family description for details of this iron-sulfur cluster-containing protein (Thompson et al. 2014).

GrpU of Pectobacterium parmentieri