2.A.80 The Tripartite Tricarboxylate Transporter (TTT) Family

A single member of the TTT family has been both functionally characterized and sequenced, the TctABC transporter of Salmonella typhimurium. This system includes three components: TctA, a large (504 aa) transmembrane protein with 12 predicted TMSs, TctB, a small (144 aa) transmembrane protein with 4 putative TMSs, and TctC, a periplasmic tricarboxylate-binding receptor (325 aas). In these respects, TctABC resembles DctMQP of the TRAP-T family (TC #2.A.56). However, there is little or no significant sequence similarity between these two systems or between members of the two different families. TctC shows some sequence and motif similarities to the phosphonate (and other) binding receptors of bacteria (Tam and Saier, 1993). The homologues of these three proteins are found in Gram-negative bacteria, Gram-positive bacteria, and archaea. TctA homologues are the most conserved components of Tct family systems while TctB homologues are the least conserved.

All TctA homologues exhibit a well-conserved motif:

(Hy)6 G (Hy)3 G* (Hy)3 G* (Hy)2 P* G* (Hy)
(Hy = a hydrophobic residue; * = a fully conserved residue.)

This motif comprises TMS 1, but it can also be found, less well conserved, in TMS 7. This fact suggests that these proteins arose by an internal gene duplication event where a 6 TMS-encoding element duplicated to give a 12 TMS-encoding gene.

 

TctC has been purified and studied (Sweet et al., 1979, 1984). It binds fluorocitrate, citrate, isocitrate and cis-aconitate with micromolar affinities and decreasing affinities in that order. Binding of citrate to this dimeric protein proved to be Na+-dependent while divalent cations (Zn2+, Mg2+ and Co2+) were inhibitory (Sweet et al., 1979). TctC homologues are found in large numbers of species of Bordetella and other β-proteobacteria (Antoine et al., 2003). Transport Kms for fluorocitrate, citrate and isocitrate are about 3 μM, 50 μM and 170 μM, respectively, and the Ka for Na+ is 0.4 mM (Ashton et al., 1980). Uptake is dependent on Na+ and the membrane potential and is completely blocked by the addition of protonophores. Mutants lacking the Tct system grow poorly or not at all on all three tricarboxylates and are resistant to fluorocitrates (Somers et al., 1981). The system is inducible when citrate or isocitrate, or to a lesser extent, cis-aconitate, is present in the growth medium (M.H. Saier, Jr., unpublished results). Induction depends on the sensor kinase/response regulator pair, TctE/TctD, encoded by genes that map adjacent to the tctABCoperon (Widenhorn et al., 1988).These systems have been reviewed (Winnen et al. 2003).

The generalized transport reaction probably catalyzed by TctABC is:

Tricarboxylate (out) + nNa+ (out) → tricarboxylate (in) + nNa+ (in).

 


 

References:

Antoine, R., F. Jacob-Dubuisson, H. Drobecq, E. Willery, S. Lesjean, and C. Locht. (2003). Overrepresentation of a gene family encoding extracytoplasmic solute receptors in Bordetella. J. Bacteriol. 185: 1470-1474.

Ashton, D.M., G.D. Sweet, J.M. Somers, and W.W. Kay. (1980). Citrate transport in Salmonella typhimurium: studies with 2-fluoro-L-erythrocitrate as a substrate. Can. J. Biochem. 58: 797-803.

Brocker, M., S. Schaffer, C. Mack, and M. Bott. (2009). Citrate utilization by Corynebacterium glutamicum is controlled by the CitAB two-component system through positive regulation of the citrate transport genes citH and tctCBA. J. Bacteriol. 191: 3869-3880.

Hosaka, M., N. Kamimura, S. Toribami, K. Mori, D. Kasai, M. Fukuda, and E. Masai. (2013). Novel tripartite aromatic acid transporter essential for terephthalate uptake in Comamonas sp. strain E6. Appl. Environ. Microbiol. 79: 6148-6155.

Ma, Y.F., Y. Zhang, J.Y. Zhang, D.W. Chen, Y. Zhu, H. Zheng, S.Y. Wang, C.Y. Jiang, G.P. Zhao, and S.J. Liu. (2009). The complete genome of Comamonas testosteroni reveals its genetic adaptations to changing environments. Appl. Environ. Microbiol. 75: 6812-6819.

Somers, J.M., G.D. Sweet, and W.W. Kay. (1981). Fluorocitrate resistant tricarboxylate transport mutants of Salmonella typhimurium. Mol. Gen. Genet. 181: 338-345.

Sweet, G.D., C.M. Kay, and W.W. Kay. (1984). Tricarboxylate-binding proteins of Salmonella typhimurium. Purification, crystallization, and physical properties. J. Biol. Chem. 259: 1586-1592.

Sweet, G.D., J.M. Somers, and W.W. Kay. (1979). Purification and properties of a citrate-binding transport component, the C protein of Salmonella typhimurium. Can. J. Biochem. 57: 710-715.

Tam, R. and M.H. Saier, Jr. (1993). Structural, functional, and evolutionary relationships among extracellular solute-binding receptors of bacteria. Microbiol. Revs. 57: 320-346.

Widenhorn, K.A., J.M. Somers, and W.W. Kay. (1988). Expression of the divergent tricarboxylate transport operon (tctI) of Salmonella typhimurium. J. Bacteriol. 170: 3223-3227.

Winnen, B., R.N. Hvorup, and M.H. Saier, Jr. (2003). The tripartite tricarboxylate transporter (TTT) family. Res. Microbiol. 154: 457-465.

Examples:

TC#NameOrganismal TypeExample
2.A.80.1.1

The tricarboxylate transporter, TctABC (Somers and Kay 1983; Winnen et al. 2003).  The high resolution structure of the receptor, TctC, is known (Sweet et al. 1984).

Bacteria (and archaea?)

TctABC of Salmonella enterica
TctA (M, 12 TMS)
TctB (M, 4 TMS)
TctC (R)

 
2.A.80.1.2

Terephthalate (TPA) aromatic acid uptake transport system, TpiBA/TphC (Hosaka et al. 2013).  May transport several aromatic acids including isophthalate, o-phthalate and protocatechuate.  Consists of three subunits: TpiB (503 aas and 13 TMSs), TpiA (162 aas and 4-5 TMSs) and TphC (322 aas and 1 TMS. tpiAB comprise an operon while tphC maps elsewhere.  o-phthalate and protocatecuate may use other receptors (Hosaka et al. 2013).

Proteobacteria

TpiBA/TphC of Comamonas sp. strain E6
TpiB (M, large) (S6BBY9)
TpiA (M, small) (S6CBZ0)
TphC (R)

 
2.A.80.1.3

The putative tricarboxylic acid transporter, TctABC.  This organism is claimed to have 66 TCT family members (Ma et al. 2009).  The organism utilizes many aromatic and non-aromatic acids that could be substrates of these transporters. 

Proteobacteria

TctABC of Comamonas testosteroni
TctA (M, large) (D0J0R9)
TctB (M, small) (D0J2J4)
TctC (R) (D0J060)

 
2.A.80.1.4

Pmf-dependent citrate uptake porter, TctABC (Brocker et al. 2009).

Actinobacteria

TctABC of Corynebacterium glutamicum
TctA (M, large; 510 aas) (S5Y5N9)
TctB (M, small; 188 aas) (S5XH28)
TctC (R) (334 aas) (S5XTE7)

 
Examples:

TC#NameOrganismal TypeExample
2.A.80.2.1

TctA homologue; 12 TMSs; DUF112

Archaea

TctA homologue of Methanosarcina mazei

 
2.A.80.2.2

TctA homologue, 12 TMSs; DUF112

Archaea

TctA homologue of Archeoglobus fulgidus