9.A.16 The Lysosomal Protein Import (LPI) Family

Lysosomes take up and degrade proteins by several endocytic pathways. Additionally, they take up cytosolic proteins for degradation in a process termed chaperone-mediated autophagy. Substrate proteins contain a targeting sequence related to KFERQ. Hsc70 and cochaperones stimulate, at least in part, by unfolding the substrate prior to transport. Chaperones in the lysosomal lumen are also required for uniport. The receptor at the cytoplasmic surface is 'lysosome-associated membrane protein 2a' (lamp2a) (Cuervo and Dice 2000). Levels of lamp2a are regulated proportionally to the activity of the pathway. Although the translocon has not been identified, lamp2a may form the channel. It multimerizes into tetramers, octamers and higher oligomers and might insert into the membrane. The native preprotein is predicted to have 2 TMSs, one at the N-terminus and one at the C-terminus. The energy source is not known, but ATP-dependent chaperones have been implicated in the process. Other constituents are not known. LAMP1 and 2 stabilize TAPL (ABCB9; TC# 3.A.1.209.2) (Majeski and Dice 2004). May play a role in Parkinson disease (Gan-Or et al. 2015).

In addition, binding of the cardiac hormone, atrial natriuretic peptide (ANP), to transmembrane guanylyl cyclase/natriuretic peptide receptor-A (GC-A/NPRA), also called LAMP1 (9.A.16.1.1) produces the intracellular second messenger cGMP in target cells. A conserved FQQI motif in the protein is essential for the internalization and subcellular trafficking of NPRA during hormone signaling in intact murine mesagial cells (Mani et al. 2016). Lamp1 mediates lipid transport, but is dispensable for autophagy in Drosophila (Chaudhry et al. 2022).  The acidic pH of lysosomes is critical for catabolism in eukaryotic cells and is altered in neurodegenerative disease including Alzheimers and Parkinsons diseases. Reports using Drosophila and mammalian cell culture systems have identified novel roles for LAMPs (Handy et al. 2024).

The overall transport reactions reported to be catalyzed by the lamp2a complex are:

Unfolded protein (cytoplasm) → Unfolded protein (lysosomal lumen)

Lipid (cytoplasm) → Lipid (lysosome)

 


 

References:

Agarraberes, F.A. and J.F. Dice (2001). Protein translocation across membranes. Biochim. Biophys. Acta 1513: 1-24.

Chaudhry, N., M. Sica, S. Surabhi, D.S. Hernandez, A. Mesquita, A. Selimovic, A. Riaz, L. Lescat, H. Bai, G.C. Macintosh, and A. Jenny. (2022). Lamp1 mediates lipid transport, but is dispensable for autophagy in. Autophagy 1-16. [Epub: Ahead of Print]

Cuervo, A.M. and J.F. Dice. (2000). Regulation of lamp2a levels in the lysosomal membrane. Traffic 1: 570-583.

Demirel O., Jan I., Wolters D., Blanz J., Saftig P., Tampe R. and Abele R. (2012). The lysosomal polypeptide transporter TAPL is stabilized by interaction with LAMP-1 and LAMP-2. J Cell Sci. 125(Pt 18):4230-40.

Dominguez-Bautista, J.A., M. Klinkenberg, N. Brehm, M. Subramaniam, B. Kern, J. Roeper, G. Auburger, and M. Jendrach. (2015). Loss of lysosome-associated membrane protein 3 (LAMP3) enhances cellular vulnerability against proteasomal inhibition. Eur J. Cell Biol. 94: 148-161.

Gan-Or, Z., P.A. Dion, and G.A. Rouleau. (2015). Genetic perspective on the role of the autophagy-lysosome pathway in Parkinson disease. Autophagy 11: 1443-1457.

Gao J., Xia L., Lu M., Zhang B., Chen Y., Xu R. and Wang L. (2012). TM7SF1 (GPR137B): a novel lysosome integral membrane protein. Mol Biol Rep. 39(9):8883-9.

Handy, J., G.C. Macintosh, and A. Jenny. (2024). Ups and downs of lysosomal pH: conflicting roles of LAMP proteins? Autophagy 20: 437-440.

Majeski, A.E. and J.F. Dice. (2004). Mechanisms of chaperone-mediated autophagy. Int J Biochem. Cell Biol. 36: 2435-2444.

Mani, I., R. Garg, and K.N. Pandey. (2016). Role of FQQI motif in the internalization, trafficking, and signaling of guanylyl-cyclase/natriuretic peptide receptor-A in cultured murine mesangial cells. Am. J. Physiol. Renal Physiol 310: F68-84.

Nagelkerke, A., A.M. Sieuwerts, J. Bussink, F.C. Sweep, M.P. Look, J.A. Foekens, J.W. Martens, and P.N. Span. (2014). LAMP3 is involved in tamoxifen resistance in breast cancer cells through the modulation of autophagy. Endocr Relat Cancer 21: 101-112.

Reczek, D., M. Schwake, J. Schröder, H. Hughes, J. Blanz, X. Jin, W. Brondyk, S. Van Patten, T. Edmunds, and P. Saftig. (2007). LIMP-2 is a receptor for lysosomal mannose-6-phosphate-independent targeting of β-glucocerebrosidase. Cell 131: 770-783.

Sakane, H., J. Urabe, S. Nakahira, K. Hino, N. Miyata, and K. Akasaki. (2020). Involvement of lysosomal integral membrane protein-2 in the activation of autophagy. Biochem. Biophys. Res. Commun. [Epub: Ahead of Print]

Szenci, G., G. Glatz, S. Takáts, and G. Juhász. (2024). The Ykt6-Snap29-Syx13 SNARE complex promotes crinophagy via secretory granule fusion with Lamp1 carrier vesicles. Sci Rep 14: 3200.

Ueo, A., M. Kubota, Y. Shirogane, S. Ohno, T. Hashiguchi, and Y. Yanagi. (2020). Lysosome-Associated Membrane Proteins Support the Furin-Mediated Processing of the Mumps Virus Fusion Protein. J. Virol. 94:.

Yamaguchi, F., H. Sakane, and K. Akasaki. (2023). Comparative study of the steady-state subcellular distribution of lysosome-associated membrane glycoprotein-2 (LAMP-2) isoforms with GYXXΦ-type tyrosine-based motifs that interact differently with four adaptor protein (AP) complexes. J Biochem. [Epub: Ahead of Print]

Yamayoshi, S., Y. Yamashita, J. Li, N. Hanagata, T. Minowa, T. Takemura, and S. Koike. (2009). Scavenger receptor B2 is a cellular receptor for enterovirus 71. Nat. Med. 15: 798-801.

Zhang, Y., J. Carlos de la Torre, and G.B. Melikyan. (2022). Human LAMP1 accelerates Lassa virus fusion and potently promotes fusion pore dilation upon forcing viral fusion with non-endosomal membrane. PLoS Pathog 18: e1010625.

Zhou, D., Y. Zhao, A. Kotecha, E.E. Fry, J.T. Kelly, X. Wang, Z. Rao, D.J. Rowlands, J. Ren, and D.I. Stuart. (2019). Unexpected mode of engagement between enterovirus 71 and its receptor SCARB2. Nat Microbiol 4: 414-419.

Zhou, Z., Q. Xue, Y. Wan, Y. Yang, J. Wang, and T. Hung. (2011). Lysosome-associated membrane glycoprotein 3 is involved in influenza A virus replication in human lung epithelial (A549) cells. Virol J 8: 384.

Examples:

TC#NameOrganismal TypeExample
9.A.16.1.1

Lysosomal-associated membrane glycoprotein-1 precursor, LAMP-1 (stabilizes TAPL (TC# 3.A.1.209.2) (Demirel et al., 2012). Human LAMP1 accelerates Lassa virus fusion and potently promotes fusion pore dilation upon forcing viral fusion with non-endosomal membrane (Zhang et al. 2022). Ectopic expression of hLAMP1 accelerated the kinetics of small fusion pore formation.  The Ykt6-Snap29-Syx13 SNARE complex promotes crinophagy via secretory granule fusion with Lamp1 carrier vesicles (Szenci et al. 2024).  The acidic pH of lysosomes is critical for catabolism in eukaryotic cells and is altered in neurodegenerative disease including Alzheimer's and Parkinson's. Reports using Drosophila and mammalian cell cultures have identified novel and, at first sight, conflicting roles for the lysosomal associated membrane proteins (LAMPs) in the regulation of the endolysosomal system (Handy et al. 2024). 

Animals

LAMP1 of Homo sapiens (P11279)

 
9.A.16.1.2

Lysosomal-associated membrane protein 2 precursor, LAMP2a. LAMP2 colocalizes with TM7SF1 (GRP137B) (TC#9.B.123.1.1) (Gao et al., 2012).  A comparative study of the steady-state subcellular distribution of LAMP-2 isoforms with GYXXPhi-type tyrosine-based motifs that interact differently with four adaptor protein (AP) complexes has appeared (Yamaguchi et al. 2023). LAMP-2A-CT interacts with all four mu-subunits (mu1, mu2, mu3A, and mu4 of AP-1, AP-2, AP-3, and AP-4, respectively). The interaction with mu3A is more robust than that with other mu-subunits. LAMP-2B-CT interacts exclusively and moderately with mu3A and did not detectably interact with any of the four mu-subunits. All isoforms localize to late endosomes and lysosomes (Yamaguchi et al. 2023).

Metazoa

LAMP2a of Homo sapiens (410 aas; 2 TMSs) (P13473)

 
9.A.16.1.3

Lysosome-associated membrane glycoprotein 1-like protein of 318 aas and 2 TMSs, N- and C-terminal.

LAMP1 of Hyalella azteca

 
9.A.16.1.4

Uncharacterized protein of 306 aas and 2 TMSs, N- and C-terminal.

UP of Trachymyrmex cornetzi

 
9.A.16.1.5

Lysosome-associated membrane glycoprotein 5, LAMP, of 281 aas and 2 TMSs, N- and C-terminal.

LAMP5 of Protobothrops mucrosquamatus

 
9.A.16.1.6

Macrosialin of 418 aas and 2 TMSs.

Macrosialin of Balaenoptera acutorostrata scammoni

 
9.A.16.1.7

Uncharacterized protein of 242 aas and 2 TMSs, N- and C-terminal

UP of Oryzias melastigma

 
9.A.16.1.8

LAMP1 (LAMP, dLAMP) of 318 aas and 2 TMSs, N- and C-terminal. The endolysosomal system not only is an integral part of the cellular catabolic machinery that processes and recycles nutrients for synthesis of biomaterials, but it also acts as signaling hub to sense and coordinate the energy state of cells with growth and differentiation. Lysosomal dysfunction adversely influences vesicular transport-dependent macromolecular degradation and thus causes serious problems for human health. In mammalian cells, loss of the lysosome associated membrane proteins, LAMP1 and LAMP2, strongly affects autophagy and cholesterol trafficking. Chaudhry et al. 2022 showed that Drosophila Lamp1 is a bona fide ortholog of vertebrate LAMP1 and LAMP2. Surprisingly and in contrast to lamp1 lamp2 double-mutant mice, Drosophila Lamp1 is not required for viability or autophagy, suggesting that fly and vertebrate LAMP proteins acquired distinct functions.

LAMP1 of Drosophila melanogaster (Fruit fly)

 
9.A.16.1.9

Lysosome-associated membrane glycoprotein 3. LAMP3, of 416 aas and 2 TMSs, N- and C-terminal.   It plays a role in the unfolded protein response that contributes to protein degradation and cell survival during proteasomal dysfunction (Dominguez-Bautista et al. 2015). It plays a role in the process of fusion of the lysosome with the autophagosome, thereby modulating the autophagic process (Nagelkerke et al. 2014). It supports the FURIN-mediated cleavage of mumps virus fusion protein F by interacting with both FURIN and the unprocessed form but not the processed form of the viral protein F (Ueo et al. 2020). It also plays a positive role in post-entry steps of influenza A virus replication (Zhou et al. 2011), and it promotes nuclear accumulation of influenza nucleoprotein/NP at early stages of viral infection while promoting the intracellular proliferation of Salmonella typhimuium.(Ueo et al. 2020). 

 

LAMP3 of Homo sapiens

 
Examples:

TC#NameOrganismal TypeExample