9.B.133 The Ice Nucleation Protein Secretion System (INP-SS) Family

The ice nucleation protein (INP) of Pseudomonas syringae is involved in pathogenicity of foliar necroses. It may be useful in snow making, frozen food preparation, and surface-display system development. The gene, inaQ, from a P. syringae strain MB03 encodes InaQ which shares similar protein domains with three P. syringae INPs, namely, InaK, InaZ, and InaV, which have an N-terminal hydrophobic domain, a central repeating domain, and a short hydrophilic C-terminal domain. Expression of the full-length InaQ and of various truncated variants has been induced in E. coli to analyze their transmembrane transport and surface-binding activities, while using the green fluorescence protein (GFP) as the fusion partner (Li et al., 2012). With two transmembrane segments and a weak secretion signal, the N-terminal domain (InaQ-N) alone was responsible for the transport process, whereas the C-terminal region was nonfunctional in protein transport. The first 18aas were essential for secretion. The mechanism of secretion was defined, but possibly, the N-terminal domain self-catalyzes secretion, or the Sec translocon could do it in spite of the lack of a typical signal peptide sequence. INA proteins show sequence similarity to members of the autotransporter-1 (1.B.12), autotransporter-2 (1.B.40), and PE-PGRS (9.B.96) families in their central repeat domains. 


 

References:

Li, Q., Q. Yan, J. Chen, Y. He, J. Wang, H. Zhang, Z. Yu, and L. Li. (2012). Molecular Characterization of an Ice Nucleation Protein Variant (InaQ) from Pseudomonas syringae and the Analysis of Its Transmembrane Transport Activity in Escherichia coli. Int J Biol Sci 8: 1097-1108.

Examples:

TC#NameOrganismal TypeExample
9.B.133.1.1

Ice nucleation active protein, InaZ

Bacteria

InaZ of Pseudomonas syringae (P06620)

 
9.B.133.1.2

Ice nucleation active protein, InaQ

Bacteria

InaQ of Pseudomonas syringae (B0FXJ3)

 
Examples:

TC#NameOrganismal TypeExample
9.B.133.2.1

Uncharacterized protein of 1861 aas with putative C-terminal porin domain.

Deinococcus/Thermus

UP of Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus silvanus)

 
9.B.133.2.2

Uncharacterized protein of 1814 aas with putative C-terminal porin domain.

Deinococcus/Thermus

UP of Oceanithermus profundus