9.B.285.  The 4 TMS Phage Infection Protein (possibly involved in LPS export) (4PIP) Family 

This is the DUF4345 family, members of which probably all have 4 TMSs, although several members are predicted to have 3 TMSs, where the central two TMSs of the 4 TMS proteins are predicted to be one TMS.  The family is quite large with numerous members from a wide variety of bacteria.  One of them, (9.B.285.1.1) been shown to be essential for phage infection in Agrobacterium, and it may play a role in LPS biosynthesis or export (Gonzalez et al. 2018).


 

References:

Gonzalez, F., R.F. Helm, K.M. Broadway, and B.E. Scharf. (2018). More than rotating flagella: LPS as a secondary receptor for flagellotropic phage 7-7-1. J. Bacteriol. [Epub: Ahead of Print]

Examples:

TC#NameOrganismal TypeExample
9.B.285.1.1

DUF4345 domain containing protein of 128 aas and 4 TMSs.  This protein has been shown to be essntial for phage infection and may play a role in lipopolysaccharide synthesis or export (Gonzalez et al. 2018).

DUF4345 protein of Agrobacterium sp. (strain H13-3) (Rhizobium lupini)

 
9.B.285.1.2

DUF4345 protein of 120 aas and 4 TMSs.

DUF4345 protein of Ruegeria meonggei

 
9.B.285.1.3

DUF4345 domain-containing proteinof 121 aas and 4 TMSs.

DUF4345 protein of Pseudonocardia alni

 
9.B.285.1.4

DUF4345 domain-containing protein of 127 aas and 4 TMSs.

DUF4345 protein of Hyphomonas chukchiensis

 
9.B.285.1.5

DUF4345 domain-containing protein of 118 aas and 3 or 4 TMSs.

DUF4345 protein of Leptolyngbya sp. JSC-1

 
9.B.285.1.6

DUF4267 domain-containing proteinof 124 aas and 4 TM

DUF4267 protein of Nonomuraea candida

 
9.B.285.1.7

DUF4345 domain-containing proteinof 142 aas and 4 TM

DUF4345 protein of Thioclava sediminum

 
9.B.285.1.8

Uncharacterized protein BRC61_02080of 166 aas and 3 TMSs.

UP of Halobacteriales archaeon

 
Examples:

TC#NameOrganismal TypeExample
9.B.285.2.1

Uncharacterized protein of 130 aas and 4 TMSs

UP of Chloroflexi bacterium

 
9.B.285.2.2

Uncharacterized protein of 128 aas and 4 TMSs

UP of Candidatus Thorarchaeota archaeon SMTZ-45 (sediment metagenome)

 
9.B.285.2.3

Uncharacterized protein of 128 aas and 4 TMSs

UP of Lokiarchaeum sp. GC14_75 (marine sediment metagenome)

 
9.B.285.2.4

Uncharacterized protein of 126 aas and 4 TMSs

UP of Candidatus Woesearchaeota archaeon

 
9.B.285.2.5

Uncharacterized protein of 275 aas and 8 TMSs in a 4 + 4 TMS arrangement.

UP of Crenarchaeota archaeon (soil metagenome)

 
9.B.285.2.6

Uncharacterized protein of 135 aas and 4 TMSs

UP of Spirochaetae bacterium HGW-Spirochaetae-5 (groundwater metagenome)

 
9.B.285.2.7

Uncharacterized protein of 189 aas and 6 TMSs in a 2 + 2 + 2 arrangement.

UP of Beduini massiliensis