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1.I.1.1.1
Nuclear Pore Complex (NPC) (Tran and Wente, 2006).  The structure of the NPC core (400kD) has been determined at 7.4 Å resolution revealing a curved Y-shaped architecture with the coat nucleoporin interactions forming the central ""triskeleton"".  32 copies of the coat neucloporin complex (CNC) structure dock into the cryoelectron tomographic reconstruction of the assembled human NPC, thus accounting for ~16 MDa of it's mass (Stuwe et al. 2015).  Import of integral membrane proteins (mono- and polytopic) into the the inner nuclear membrane occurs by an active, transport factor-dependent process (Laba et al. 2015). Ndc1 and Pom52 are partially redundant NPC components that are essential for proper assembly of the NPC. The absence of Ndc1p and Pom152p results in aberrant pores that have enlarged diameters and lack proteinaceous material, leading to increased diffusion between the cytoplasm and the nucleus (Madrid et al. 2006). Pom152 is a transmembrane protein within the nuclear pore complex (NPC) of fungi that is important for NPC assembly and structure. Pom152 is comprised of a short amino-terminal region that remains on the cytosolic side of the nuclear envelope (NE) and interacts with NPC proteins, a transmembrane domain, and a large, glycosylated carboxy-terminal domain within the NE lumen. Here we show that the N-terminal 200 amino acids of Pom152 that include only the amino-terminal and transmembrane regions are sufficient for localization to the NPC (Brown et al. 2021). Atg39 selectively captures the inner nuclear membrane into lumenal vesicles for delivery to the autophagosome (Chandra et al. 2021). The inner nuclear membrane (INM) changes its protein composition during gametogenesis, sheding light on mechanisms used to shape the INM proteome of spores (Shelton et al. 2021). Several nucleoporins with FG-repeats (phenylalanine-glycine repeats) (barrier nucleoporins) possess potential amyloidogenic properties (Danilov et al. 2023).  A multiscale structure of the yeast nuclear pore complex has been described, and its implications have been discussed (Akey et al. 2023).  NPCs direct the nucleocytoplasmic transport of macromolecules, and Akey et al. 2023 provided a composite multiscale structure of the yeast NPC, based on improved 3D density maps from cryoEM and AlphaFold2 models. Key features of the inner and outer rings were integrated into a comprehensive model. The authors resolved flexible connectors that tie together the core scaffold, along with equatorial transmembrane complexes and a lumenal ring that anchor this channel within the pore membrane. The organization of the nuclear double outer ring revealed an architecture that may be shared with ancestral NPCs. Additional connections between the core scaffold and the central transporter suggest that under certain conditions, a degree of local organization is present at the periphery of the transport machinery. These connectors may couple conformational changes in the scaffold to the central transporter to modulate transport. Collectively, this analysis provides insights into assembly, transport, and NPC evolution (Akey et al. 2023).

Accession Number:P06704
Protein Name:Cell division control protein 31
Length:161
Molecular Weight:18751.00
Species:Saccharomyces cerevisiae (Baker's yeast) [4932]
Location1 / Topology2 / Orientation3: Nucleus1
Substrate

Cross database links:

DIP: DIP-2273N DIP-2273N DIP-2273N DIP-2273N DIP-2273N
RefSeq: NP_014900.1   
Entrez Gene ID: 854431   
Pfam: PF00036   
KEGG: sce:YOR257W    sce:YOR257W    sce:YOR257W    sce:YOR257W    sce:YOR257W   

Gene Ontology

GO:0005825 C:half bridge of spindle pole body
GO:0005643 C:nuclear pore
GO:0070390 C:transcription export complex 2
GO:0005509 F:calcium ion binding
GO:0042802 F:identical protein binding
GO:0005200 F:structural constituent of cytoskeleton
GO:0051301 P:cell division
GO:0007020 P:microtubule nucleation
GO:0007067 P:mitosis
GO:0051028 P:mRNA transport
GO:0043161 P:proteasomal ubiquitin-dependent protein cat...
GO:0015031 P:protein transport
GO:0007103 P:spindle pole body duplication in nuclear en...
GO:0055085 P:transmembrane transport
GO:0043161 P:proteasomal ubiquitin-dependent protein catabolic process
GO:0007103 P:spindle pole body duplication in nuclear envelope

References (75)

[1] “Yeast gene required for spindle pole body duplication: homology of its product with Ca2+-binding proteins.”  Baum P.et.al.   3526331
[2] “The Cdc31p-binding protein Kar1p is a component of the half bridge of the yeast spindle pole body.”  Spang A.et.al.   7876310
[3] “Sequencing analysis of a 36.8 kb fragment of yeast chromosome XV reveals 26 open reading frames including SEC63, CDC31, SUG2, GCD1, RBL2, PNT1, PAC1 and VPH1.”  Poirey R.et.al.   9153759
[4] “The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.”  Dujon B.et.al.   9169874
[5] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.”  Hu Y.et.al.   17322287
[6] “Direct interaction between yeast spindle pole body components: Kar1p is required for Cdc31p localization to the spindle pole body.”  Biggins S.et.al.   8188750
[7] “Genetic interactions between CDC31 and KAR1, two genes required for duplication of the microtubule organizing center in Saccharomyces cerevisiae.”  Vallen E.A.et.al.   8070654
[8] “The yeast centrin, cdc31p, and the interacting protein kinase, Kic1p, are required for cell integrity.”  Sullivan D.S.et.al.   9813095
[9] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[10] “Fine structure analysis of the yeast centrin, Cdc31p, identifies residues specific for cell morphology and spindle pole body duplication.”  Ivanovska I.et.al.   11156974
[11] “Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p.”  Jaspersen S.L.et.al.   12486115
[12] “Sfi1p has conserved centrin-binding sites and an essential function in budding yeast spindle pole body duplication.”  Kilmartin J.V.et.al.   14504268
[13] “Composition of the spindle pole body of Saccharomyces cerevisiae and the proteins involved in its duplication.”  Helfant A.H.et.al.   11935220
[14] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[15] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[16] “Yeast gene required for spindle pole body duplication: homology of its product with Ca2+-binding proteins.”  Baum P.et.al.   3526331
[17] “The Cdc31p-binding protein Kar1p is a component of the half bridge of the yeast spindle pole body.”  Spang A.et.al.   7876310
[18] “Sequencing analysis of a 36.8 kb fragment of yeast chromosome XV reveals 26 open reading frames including SEC63, CDC31, SUG2, GCD1, RBL2, PNT1, PAC1 and VPH1.”  Poirey R.et.al.   9153759
[19] “The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.”  Dujon B.et.al.   9169874
[20] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.”  Hu Y.et.al.   17322287
[21] “Direct interaction between yeast spindle pole body components: Kar1p is required for Cdc31p localization to the spindle pole body.”  Biggins S.et.al.   8188750
[22] “Genetic interactions between CDC31 and KAR1, two genes required for duplication of the microtubule organizing center in Saccharomyces cerevisiae.”  Vallen E.A.et.al.   8070654
[23] “The yeast centrin, cdc31p, and the interacting protein kinase, Kic1p, are required for cell integrity.”  Sullivan D.S.et.al.   9813095
[24] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[25] “Fine structure analysis of the yeast centrin, Cdc31p, identifies residues specific for cell morphology and spindle pole body duplication.”  Ivanovska I.et.al.   11156974
[26] “Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p.”  Jaspersen S.L.et.al.   12486115
[27] “Sfi1p has conserved centrin-binding sites and an essential function in budding yeast spindle pole body duplication.”  Kilmartin J.V.et.al.   14504268
[28] “Composition of the spindle pole body of Saccharomyces cerevisiae and the proteins involved in its duplication.”  Helfant A.H.et.al.   11935220
[29] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[30] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[31] “Yeast gene required for spindle pole body duplication: homology of its product with Ca2+-binding proteins.”  Baum P.et.al.   3526331
[32] “The Cdc31p-binding protein Kar1p is a component of the half bridge of the yeast spindle pole body.”  Spang A.et.al.   7876310
[33] “Sequencing analysis of a 36.8 kb fragment of yeast chromosome XV reveals 26 open reading frames including SEC63, CDC31, SUG2, GCD1, RBL2, PNT1, PAC1 and VPH1.”  Poirey R.et.al.   9153759
[34] “The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.”  Dujon B.et.al.   9169874
[35] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.”  Hu Y.et.al.   17322287
[36] “Direct interaction between yeast spindle pole body components: Kar1p is required for Cdc31p localization to the spindle pole body.”  Biggins S.et.al.   8188750
[37] “Genetic interactions between CDC31 and KAR1, two genes required for duplication of the microtubule organizing center in Saccharomyces cerevisiae.”  Vallen E.A.et.al.   8070654
[38] “The yeast centrin, cdc31p, and the interacting protein kinase, Kic1p, are required for cell integrity.”  Sullivan D.S.et.al.   9813095
[39] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[40] “Fine structure analysis of the yeast centrin, Cdc31p, identifies residues specific for cell morphology and spindle pole body duplication.”  Ivanovska I.et.al.   11156974
[41] “Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p.”  Jaspersen S.L.et.al.   12486115
[42] “Sfi1p has conserved centrin-binding sites and an essential function in budding yeast spindle pole body duplication.”  Kilmartin J.V.et.al.   14504268
[43] “Composition of the spindle pole body of Saccharomyces cerevisiae and the proteins involved in its duplication.”  Helfant A.H.et.al.   11935220
[44] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[45] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[46] “Yeast gene required for spindle pole body duplication: homology of its product with Ca2+-binding proteins.”  Baum P.et.al.   3526331
[47] “The Cdc31p-binding protein Kar1p is a component of the half bridge of the yeast spindle pole body.”  Spang A.et.al.   7876310
[48] “Sequencing analysis of a 36.8 kb fragment of yeast chromosome XV reveals 26 open reading frames including SEC63, CDC31, SUG2, GCD1, RBL2, PNT1, PAC1 and VPH1.”  Poirey R.et.al.   9153759
[49] “The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.”  Dujon B.et.al.   9169874
[50] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.”  Hu Y.et.al.   17322287
[51] “Direct interaction between yeast spindle pole body components: Kar1p is required for Cdc31p localization to the spindle pole body.”  Biggins S.et.al.   8188750
[52] “Genetic interactions between CDC31 and KAR1, two genes required for duplication of the microtubule organizing center in Saccharomyces cerevisiae.”  Vallen E.A.et.al.   8070654
[53] “The yeast centrin, cdc31p, and the interacting protein kinase, Kic1p, are required for cell integrity.”  Sullivan D.S.et.al.   9813095
[54] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[55] “Fine structure analysis of the yeast centrin, Cdc31p, identifies residues specific for cell morphology and spindle pole body duplication.”  Ivanovska I.et.al.   11156974
[56] “Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p.”  Jaspersen S.L.et.al.   12486115
[57] “Sfi1p has conserved centrin-binding sites and an essential function in budding yeast spindle pole body duplication.”  Kilmartin J.V.et.al.   14504268
[58] “Composition of the spindle pole body of Saccharomyces cerevisiae and the proteins involved in its duplication.”  Helfant A.H.et.al.   11935220
[59] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[60] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[61] “Yeast gene required for spindle pole body duplication: homology of its product with Ca2+-binding proteins.”  Baum P.et.al.   3526331
[62] “The Cdc31p-binding protein Kar1p is a component of the half bridge of the yeast spindle pole body.”  Spang A.et.al.   7876310
[63] “Sequencing analysis of a 36.8 kb fragment of yeast chromosome XV reveals 26 open reading frames including SEC63, CDC31, SUG2, GCD1, RBL2, PNT1, PAC1 and VPH1.”  Poirey R.et.al.   9153759
[64] “The nucleotide sequence of Saccharomyces cerevisiae chromosome XV.”  Dujon B.et.al.   9169874
[65] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.”  Hu Y.et.al.   17322287
[66] “Direct interaction between yeast spindle pole body components: Kar1p is required for Cdc31p localization to the spindle pole body.”  Biggins S.et.al.   8188750
[67] “Genetic interactions between CDC31 and KAR1, two genes required for duplication of the microtubule organizing center in Saccharomyces cerevisiae.”  Vallen E.A.et.al.   8070654
[68] “The yeast centrin, cdc31p, and the interacting protein kinase, Kic1p, are required for cell integrity.”  Sullivan D.S.et.al.   9813095
[69] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[70] “Fine structure analysis of the yeast centrin, Cdc31p, identifies residues specific for cell morphology and spindle pole body duplication.”  Ivanovska I.et.al.   11156974
[71] “Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p.”  Jaspersen S.L.et.al.   12486115
[72] “Sfi1p has conserved centrin-binding sites and an essential function in budding yeast spindle pole body duplication.”  Kilmartin J.V.et.al.   14504268
[73] “Composition of the spindle pole body of Saccharomyces cerevisiae and the proteins involved in its duplication.”  Helfant A.H.et.al.   11935220
[74] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[75] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
Structure:
2DOQ   2GV5   3FWB   3FWC   4MBE     

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSKNRSSLQS GPLNSELLEE QKQEIYEAFS LFDMNNDGFL DYHELKVAMK ALGFELPKRE 
61:	ILDLIDEYDS EGRHLMKYDD FYIVMGEKIL KRDPLDEIKR AFQLFDDDHT GKISIKNLRR 
121:	VAKELGETLT DEELRAMIEE FDLDGDGEIN ENEFIAICTD S