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1.I.1.1.1
Nuclear Pore Complex (NPC) (Tran and Wente, 2006).  The structure of the NPC core (400kD) has been determined at 7.4 Å resolution revealing a curved Y-shaped architecture with the coat nucleoporin interactions forming the central ""triskeleton"".  32 copies of the coat neucloporin complex (CNC) structure dock into the cryoelectron tomographic reconstruction of the assembled human NPC, thus accounting for ~16 MDa of it's mass (Stuwe et al. 2015).  Import of integral membrane proteins (mono- and polytopic) into the the inner nuclear membrane occurs by an active, transport factor-dependent process (Laba et al. 2015). Ndc1 and Pom52 are partially redundant NPC components that are essential for proper assembly of the NPC. The absence of Ndc1p and Pom152p results in aberrant pores that have enlarged diameters and lack proteinaceous material, leading to increased diffusion between the cytoplasm and the nucleus (Madrid et al. 2006). Pom152 is a transmembrane protein within the nuclear pore complex (NPC) of fungi that is important for NPC assembly and structure. Pom152 is comprised of a short amino-terminal region that remains on the cytosolic side of the nuclear envelope (NE) and interacts with NPC proteins, a transmembrane domain, and a large, glycosylated carboxy-terminal domain within the NE lumen. Here we show that the N-terminal 200 amino acids of Pom152 that include only the amino-terminal and transmembrane regions are sufficient for localization to the NPC (Brown et al. 2021). Atg39 selectively captures the inner nuclear membrane into lumenal vesicles for delivery to the autophagosome (Chandra et al. 2021). The inner nuclear membrane (INM) changes its protein composition during gametogenesis, sheding light on mechanisms used to shape the INM proteome of spores (Shelton et al. 2021). Several nucleoporins with FG-repeats (phenylalanine-glycine repeats) (barrier nucleoporins) possess potential amyloidogenic properties (Danilov et al. 2023).  A multiscale structure of the yeast nuclear pore complex has been described, and its implications have been discussed (Akey et al. 2023).  NPCs direct the nucleocytoplasmic transport of macromolecules, and Akey et al. 2023 provided a composite multiscale structure of the yeast NPC, based on improved 3D density maps from cryoEM and AlphaFold2 models. Key features of the inner and outer rings were integrated into a comprehensive model. The authors resolved flexible connectors that tie together the core scaffold, along with equatorial transmembrane complexes and a lumenal ring that anchor this channel within the pore membrane. The organization of the nuclear double outer ring revealed an architecture that may be shared with ancestral NPCs. Additional connections between the core scaffold and the central transporter suggest that under certain conditions, a degree of local organization is present at the periphery of the transport machinery. These connectors may couple conformational changes in the scaffold to the central transporter to modulate transport. Collectively, this analysis provides insights into assembly, transport, and NPC evolution (Akey et al. 2023).

Accession Number:P36161
Protein Name:Nucleoporin NUP133
Length:1157
Molecular Weight:133321.00
Species:Saccharomyces cerevisiae (Baker's yeast) [4932]
Location1 / Topology2 / Orientation3: Nucleus1 / Peripheral membrane protein2 / Cytoplasmic side3
Substrate

Cross database links:

DIP: DIP-2428N DIP-2428N DIP-2428N DIP-2428N
RefSeq: NP_013008.1   
Entrez Gene ID: 853957   
Pfam: PF03177    PF08801   
KEGG: sce:YKR082W    sce:YKR082W    sce:YKR082W    sce:YKR082W   

Gene Ontology

GO:0031965 C:nuclear membrane
GO:0031080 C:Nup107-160 complex
GO:0005515 F:protein binding
GO:0005198 F:structural molecule activity
GO:0050000 P:chromosome localization
GO:0006406 P:mRNA export from nucleus
GO:0006609 P:mRNA-binding (hnRNP) protein import into nu...
GO:0006607 P:NLS-bearing substrate import into nucleus
GO:0006999 P:nuclear pore organization
GO:0006611 P:protein export from nucleus
GO:0006610 P:ribosomal protein import into nucleus
GO:0006407 P:rRNA export from nucleus
GO:0006408 P:snRNA export from nucleus
GO:0006608 P:snRNP protein import into nucleus
GO:0055085 P:transmembrane transport
GO:0006409 P:tRNA export from nucleus
GO:0031990 P:mRNA export from nucleus in response to heat stress
GO:0006609 P:mRNA-binding (hnRNP) protein import into nucleus
GO:0031081 P:nuclear pore distribution
GO:0016973 P:poly(A)+ mRNA export from nucleus
GO:0000973 P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery

References (52)

[1] “A novel nuclear pore protein Nup133p with distinct roles in poly(A)+ RNA transport and nuclear pore distribution.”  Doye V.et.al.   7813444
[2] “The complete sequence of an 18,002 bp segment of Saccharomyces cerevisiae chromosome XI contains the HBS1, MRP-L20 and PRP16 genes, and six new open reading frames.”  Garcia-Cantalejo J.M.et.al.   8203164
[3] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[4] “Disruption of the nucleoporin gene NUP133 results in clustering of nuclear pore complexes.”  Pemberton L.F.et.al.   7862658
[5] “Yeast nucleoporin mutants are defective in pre-tRNA splicing.”  Sharma K.et.al.   8524308
[6] “Dynamics of nuclear pore distribution in nucleoporin mutant yeast cells.”  Belgareh N.et.al.   9049242
[7] “Factors affecting nuclear export of the 60S ribosomal subunit in vivo.”  Stage-Zimmermann T.et.al.   11071906
[8] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[9] “Modular self-assembly of a Y-shaped multiprotein complex from seven nucleoporins.”  Lutzmann M.et.al.   11823431
[10] “Nuclear accumulation of the small GTPase Gsp1p depends on nucleoporins Nup133p, Rat2p/Nup120p, Nup85p, Nic96p, and the acetyl-CoA carboxylase Acc1p.”  Gao H.et.al.   12730220
[11] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[12] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[13] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[14] “A novel nuclear pore protein Nup133p with distinct roles in poly(A)+ RNA transport and nuclear pore distribution.”  Doye V.et.al.   7813444
[15] “The complete sequence of an 18,002 bp segment of Saccharomyces cerevisiae chromosome XI contains the HBS1, MRP-L20 and PRP16 genes, and six new open reading frames.”  Garcia-Cantalejo J.M.et.al.   8203164
[16] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[17] “Disruption of the nucleoporin gene NUP133 results in clustering of nuclear pore complexes.”  Pemberton L.F.et.al.   7862658
[18] “Yeast nucleoporin mutants are defective in pre-tRNA splicing.”  Sharma K.et.al.   8524308
[19] “Dynamics of nuclear pore distribution in nucleoporin mutant yeast cells.”  Belgareh N.et.al.   9049242
[20] “Factors affecting nuclear export of the 60S ribosomal subunit in vivo.”  Stage-Zimmermann T.et.al.   11071906
[21] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[22] “Modular self-assembly of a Y-shaped multiprotein complex from seven nucleoporins.”  Lutzmann M.et.al.   11823431
[23] “Nuclear accumulation of the small GTPase Gsp1p depends on nucleoporins Nup133p, Rat2p/Nup120p, Nup85p, Nic96p, and the acetyl-CoA carboxylase Acc1p.”  Gao H.et.al.   12730220
[24] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[25] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[26] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[27] “A novel nuclear pore protein Nup133p with distinct roles in poly(A)+ RNA transport and nuclear pore distribution.”  Doye V.et.al.   7813444
[28] “The complete sequence of an 18,002 bp segment of Saccharomyces cerevisiae chromosome XI contains the HBS1, MRP-L20 and PRP16 genes, and six new open reading frames.”  Garcia-Cantalejo J.M.et.al.   8203164
[29] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[30] “Disruption of the nucleoporin gene NUP133 results in clustering of nuclear pore complexes.”  Pemberton L.F.et.al.   7862658
[31] “Yeast nucleoporin mutants are defective in pre-tRNA splicing.”  Sharma K.et.al.   8524308
[32] “Dynamics of nuclear pore distribution in nucleoporin mutant yeast cells.”  Belgareh N.et.al.   9049242
[33] “Factors affecting nuclear export of the 60S ribosomal subunit in vivo.”  Stage-Zimmermann T.et.al.   11071906
[34] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[35] “Modular self-assembly of a Y-shaped multiprotein complex from seven nucleoporins.”  Lutzmann M.et.al.   11823431
[36] “Nuclear accumulation of the small GTPase Gsp1p depends on nucleoporins Nup133p, Rat2p/Nup120p, Nup85p, Nic96p, and the acetyl-CoA carboxylase Acc1p.”  Gao H.et.al.   12730220
[37] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[38] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[39] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[40] “A novel nuclear pore protein Nup133p with distinct roles in poly(A)+ RNA transport and nuclear pore distribution.”  Doye V.et.al.   7813444
[41] “The complete sequence of an 18,002 bp segment of Saccharomyces cerevisiae chromosome XI contains the HBS1, MRP-L20 and PRP16 genes, and six new open reading frames.”  Garcia-Cantalejo J.M.et.al.   8203164
[42] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[43] “Disruption of the nucleoporin gene NUP133 results in clustering of nuclear pore complexes.”  Pemberton L.F.et.al.   7862658
[44] “Yeast nucleoporin mutants are defective in pre-tRNA splicing.”  Sharma K.et.al.   8524308
[45] “Dynamics of nuclear pore distribution in nucleoporin mutant yeast cells.”  Belgareh N.et.al.   9049242
[46] “Factors affecting nuclear export of the 60S ribosomal subunit in vivo.”  Stage-Zimmermann T.et.al.   11071906
[47] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[48] “Modular self-assembly of a Y-shaped multiprotein complex from seven nucleoporins.”  Lutzmann M.et.al.   11823431
[49] “Nuclear accumulation of the small GTPase Gsp1p depends on nucleoporins Nup133p, Rat2p/Nup120p, Nup85p, Nic96p, and the acetyl-CoA carboxylase Acc1p.”  Gao H.et.al.   12730220
[50] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[51] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[52] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
Structure:
3KFO     

External Searches:

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MSEKKVHLRL RKELSVPIAV VENESLAQLS YEEESQASLM DISMEQQQLR LHSHFDNSKV 
61:	FTENNRYIVK TLQTDYSSGF SNDDELNGYI DMQIGYGLVN DHKKVYIWNI HSTQKDTPYI 
121:	TVPFRSDDND EIAVAPRCIL TFPATMDESP LALNPNDQDE TGGLIIIKGS KAIYYEDINS 
181:	INNLNFKLSE KFSHELELPI NSSGGEKCDL MLNCEPAGIV LSTNMGRIFF ITIRNSMGKP 
241:	QLKLGKLLNK PFKLGIWSKI FNTNSSVVSL RNGPILGKGT RLVYITTNKG IFQTWQLSAT 
301:	NSHPTKLIDV NIYEAILESL QDLYPFAHGT LKIWDSHPLQ DESSQLFLSS IYDSSCNETY 
361:	YILSTIIFDS SSNSFTIFST YRLNTFMESI TDTKFKPKIF IPQMENANDT NEVTSILVMF 
421:	PNAVVITQVN SKLDSSYSMR RKWEDIVSLR NDIDIIGSGY DSKSLYVLTK QMGVLQFFVK 
481:	ENEETNSKPE VGFVKSHVDQ AVYFSKINAN PIDFNLPPEI SLDQESIEHD LKLTSEEIFH 
541:	SNGKYIPPML NTLGQHLSVR KEFFQNFLTF VAKNFNYKIS PELKLDLIEK FEILNCCIKF 
601:	NSIIRQSDVL NDIWEKTLSN YNLTQNEHLT TKTVVINSPD VFPVIFKQFL NHVVFVLFPS 
661:	QNQNFKLNVT NLINLCFYDG ILEEGEKTIR YELLELDPME VDTSKLPWFI NFDYLNCINQ 
721:	CFFDFTFACE EEGSLDSYKE GLLKIVKILY YQFNQFKIWI NTQPVKSVNA NDNFININNL 
781:	YDDNHLDWNH VLCKVNLKEQ CIQIAEFYKD LSGLVQTLQT LDQNDSTTVS LYETFFNEFP 
841:	KEFSFTLFEY LIKHKKLNDL IFRFPQQHDV LIQFFQESAP KYGHVAWIQQ ILDGSYADAM 
901:	NTLKNITVDD SKKGESLSEC ELHLNVAKLS SLLVEKDNLD INTLRKIQYN LDTIDAEKNI 
961:	SNKLKKGEVQ ICKRFKNGSI REVFNILVEE LKSTTVVNLS DLVELYSMLD DEESLFIPLR 
1021:	LLSVDGNLLN FEVKKFLNAL VWRRIVLLNA SNEGDKLLQH IVKRVFDEEL PKNNDFPLPS 
1081:	VDLLCDKSLL TPEYISETYG RFPIDQNAIR EEIYEEISQV ETLNSDNSLE IKLHSTIGSV 
1141:	AKEKNYTINY ETNTVEY