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1.I.1.1.1
Nuclear Pore Complex (NPC) (Tran and Wente, 2006).  The structure of the NPC core (400kD) has been determined at 7.4 Å resolution revealing a curved Y-shaped architecture with the coat nucleoporin interactions forming the central ""triskeleton"".  32 copies of the coat neucloporin complex (CNC) structure dock into the cryoelectron tomographic reconstruction of the assembled human NPC, thus accounting for ~16 MDa of it's mass (Stuwe et al. 2015).  Import of integral membrane proteins (mono- and polytopic) into the the inner nuclear membrane occurs by an active, transport factor-dependent process (Laba et al. 2015). Ndc1 and Pom52 are partially redundant NPC components that are essential for proper assembly of the NPC. The absence of Ndc1p and Pom152p results in aberrant pores that have enlarged diameters and lack proteinaceous material, leading to increased diffusion between the cytoplasm and the nucleus (Madrid et al. 2006). Pom152 is a transmembrane protein within the nuclear pore complex (NPC) of fungi that is important for NPC assembly and structure. Pom152 is comprised of a short amino-terminal region that remains on the cytosolic side of the nuclear envelope (NE) and interacts with NPC proteins, a transmembrane domain, and a large, glycosylated carboxy-terminal domain within the NE lumen. Here we show that the N-terminal 200 amino acids of Pom152 that include only the amino-terminal and transmembrane regions are sufficient for localization to the NPC (Brown et al. 2021). Atg39 selectively captures the inner nuclear membrane into lumenal vesicles for delivery to the autophagosome (Chandra et al. 2021). The inner nuclear membrane (INM) changes its protein composition during gametogenesis, sheding light on mechanisms used to shape the INM proteome of spores (Shelton et al. 2021). Several nucleoporins with FG-repeats (phenylalanine-glycine repeats) (barrier nucleoporins) possess potential amyloidogenic properties (Danilov et al. 2023).  A multiscale structure of the yeast nuclear pore complex has been described, and its implications have been discussed (Akey et al. 2023).  NPCs direct the nucleocytoplasmic transport of macromolecules, and Akey et al. 2023 provided a composite multiscale structure of the yeast NPC, based on improved 3D density maps from cryoEM and AlphaFold2 models. Key features of the inner and outer rings were integrated into a comprehensive model. The authors resolved flexible connectors that tie together the core scaffold, along with equatorial transmembrane complexes and a lumenal ring that anchor this channel within the pore membrane. The organization of the nuclear double outer ring revealed an architecture that may be shared with ancestral NPCs. Additional connections between the core scaffold and the central transporter suggest that under certain conditions, a degree of local organization is present at the periphery of the transport machinery. These connectors may couple conformational changes in the scaffold to the central transporter to modulate transport. Collectively, this analysis provides insights into assembly, transport, and NPC evolution (Akey et al. 2023).

Accession Number:P38181
Protein Name:Nucleoporin NUP170
Length:1502
Molecular Weight:169475.00
Species:Saccharomyces cerevisiae (Baker's yeast) [4932]
Location1 / Topology2 / Orientation3: Nucleus1 / Multi-pass membrane protein2
Substrate

Cross database links:

DIP: DIP-2450N DIP-2450N DIP-2450N DIP-2450N
RefSeq: NP_009474.1   
Entrez Gene ID: 852199   
Pfam: PF03177    PF08801   
KEGG: sce:YBL079W    sce:YBL079W    sce:YBL079W    sce:YBL079W   

Gene Ontology

GO:0031015 C:karyopherin docking complex
GO:0031965 C:nuclear membrane
GO:0005515 F:protein binding
GO:0017056 F:structural constituent of nuclear pore
GO:0007059 P:chromosome segregation
GO:0006406 P:mRNA export from nucleus
GO:0006609 P:mRNA-binding (hnRNP) protein import into nu...
GO:0006607 P:NLS-bearing substrate import into nucleus
GO:0051292 P:nuclear pore complex assembly
GO:0006611 P:protein export from nucleus
GO:0000059 P:protein import into nucleus, docking
GO:0006612 P:protein targeting to membrane
GO:0006610 P:ribosomal protein import into nucleus
GO:0006407 P:rRNA export from nucleus
GO:0006408 P:snRNA export from nucleus
GO:0006608 P:snRNP protein import into nucleus
GO:0055085 P:transmembrane transport
GO:0006409 P:tRNA export from nucleus
GO:0005643 C:nuclear pore
GO:0006609 P:mRNA-binding (hnRNP) protein import into nucleus

References (48)

[1] “Sequence analysis of a 78.6 kb segment of the left end of Saccharomyces cerevisiae chromosome II.”  Obermaier B.et.al.   7502586
[2] “Complete DNA sequence of yeast chromosome II.”  Feldmann H.et.al.   7813418
[3] “Two novel related yeast nucleoporins Nup170p and Nup157p: complementation with the vertebrate homologue Nup155p and functional interactions with the yeast nuclear pore-membrane protein Pom152p.”  Aitchison J.D.et.al.   8522578
[4] “Specific binding of the karyopherin Kap121p to a subunit of the nuclear pore complex containing Nup53p, Nup59p, and Nup170p.”  Marelli M.et.al.   9864357
[5] “Karyopherins in nuclear pore biogenesis: a role for Kap121p in the assembly of Nup53p into nuclear pore complexes.”  Lusk C.P.et.al.   12403813
[6] “Cell cycle regulated transport controlled by alterations in the nuclear pore complex.”  Makhnevych T.et.al.   14697200
[7] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[8] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[9] “Novel role for a Saccharomyces cerevisiae nucleoporin, Nup170p, in chromosome segregation.”  Kerscher O.et.al.   11290711
[10] “The yeast nuclear pore complex functionally interacts with components of the spindle assembly checkpoint.”  Iouk T.et.al.   12473689
[11] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[12] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[13] “Sequence analysis of a 78.6 kb segment of the left end of Saccharomyces cerevisiae chromosome II.”  Obermaier B.et.al.   7502586
[14] “Complete DNA sequence of yeast chromosome II.”  Feldmann H.et.al.   7813418
[15] “Two novel related yeast nucleoporins Nup170p and Nup157p: complementation with the vertebrate homologue Nup155p and functional interactions with the yeast nuclear pore-membrane protein Pom152p.”  Aitchison J.D.et.al.   8522578
[16] “Specific binding of the karyopherin Kap121p to a subunit of the nuclear pore complex containing Nup53p, Nup59p, and Nup170p.”  Marelli M.et.al.   9864357
[17] “Karyopherins in nuclear pore biogenesis: a role for Kap121p in the assembly of Nup53p into nuclear pore complexes.”  Lusk C.P.et.al.   12403813
[18] “Cell cycle regulated transport controlled by alterations in the nuclear pore complex.”  Makhnevych T.et.al.   14697200
[19] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[20] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[21] “Novel role for a Saccharomyces cerevisiae nucleoporin, Nup170p, in chromosome segregation.”  Kerscher O.et.al.   11290711
[22] “The yeast nuclear pore complex functionally interacts with components of the spindle assembly checkpoint.”  Iouk T.et.al.   12473689
[23] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[24] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[25] “Sequence analysis of a 78.6 kb segment of the left end of Saccharomyces cerevisiae chromosome II.”  Obermaier B.et.al.   7502586
[26] “Complete DNA sequence of yeast chromosome II.”  Feldmann H.et.al.   7813418
[27] “Two novel related yeast nucleoporins Nup170p and Nup157p: complementation with the vertebrate homologue Nup155p and functional interactions with the yeast nuclear pore-membrane protein Pom152p.”  Aitchison J.D.et.al.   8522578
[28] “Specific binding of the karyopherin Kap121p to a subunit of the nuclear pore complex containing Nup53p, Nup59p, and Nup170p.”  Marelli M.et.al.   9864357
[29] “Karyopherins in nuclear pore biogenesis: a role for Kap121p in the assembly of Nup53p into nuclear pore complexes.”  Lusk C.P.et.al.   12403813
[30] “Cell cycle regulated transport controlled by alterations in the nuclear pore complex.”  Makhnevych T.et.al.   14697200
[31] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[32] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[33] “Novel role for a Saccharomyces cerevisiae nucleoporin, Nup170p, in chromosome segregation.”  Kerscher O.et.al.   11290711
[34] “The yeast nuclear pore complex functionally interacts with components of the spindle assembly checkpoint.”  Iouk T.et.al.   12473689
[35] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[36] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[37] “Sequence analysis of a 78.6 kb segment of the left end of Saccharomyces cerevisiae chromosome II.”  Obermaier B.et.al.   7502586
[38] “Complete DNA sequence of yeast chromosome II.”  Feldmann H.et.al.   7813418
[39] “Two novel related yeast nucleoporins Nup170p and Nup157p: complementation with the vertebrate homologue Nup155p and functional interactions with the yeast nuclear pore-membrane protein Pom152p.”  Aitchison J.D.et.al.   8522578
[40] “Specific binding of the karyopherin Kap121p to a subunit of the nuclear pore complex containing Nup53p, Nup59p, and Nup170p.”  Marelli M.et.al.   9864357
[41] “Karyopherins in nuclear pore biogenesis: a role for Kap121p in the assembly of Nup53p into nuclear pore complexes.”  Lusk C.P.et.al.   12403813
[42] “Cell cycle regulated transport controlled by alterations in the nuclear pore complex.”  Makhnevych T.et.al.   14697200
[43] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[44] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[45] “Novel role for a Saccharomyces cerevisiae nucleoporin, Nup170p, in chromosome segregation.”  Kerscher O.et.al.   11290711
[46] “The yeast nuclear pore complex functionally interacts with components of the spindle assembly checkpoint.”  Iouk T.et.al.   12473689
[47] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[48] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
Structure:
3I5P   3I5Q     

External Searches:

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MFQSFFHNNG PAAAGETFSD SRSYPLTNHQ EVPRNGLNEL ASSATKAQQQ PTHILNSYPI 
61:	TGSNPLMRAS AMGATSGSIN PNMSNMNEHI RVSGMGTSKP LDLAGKYIDH LQHKDSNTPV 
121:	LDERSYYNSG VDYNFSREKN GLGAFTPFEK QDVFNIPDEI LHEFSTSQTK TDMGIFPELN 
181:	RCWITIDNKL ILWNINNDNE YQVVDDMKHT IQKVALVRPK PNTFVPAVKH LLLISTTMEL 
241:	FMFAISLDKA TNELSVFNTH LSVPVQGIDV IDIVSHERSG RIFFAGQASG LNIWELHYSG 
301:	SDDWFNSKCS KVCLTKSALL SLLPTNMLSQ IPGVDFIQAL FEDNSNGNGG FSQETITQLT 
361:	IDQQRGIIYS LSSKSTIRAY VITEKSLEGP MSIEPAYISR IIGTTTARAA PILGPKYLKI 
421:	VKISSVAPEE NNNLFLVALT VGGVRLYFNG SMGRFNIEAL RLESIKFPPS SVTPEVIQQE 
481:	LLHQQQEQAK RSFPFFSNLM SSEPVLLKFQ KKSSVLLETT KASTIISPGI FFSAVIKSSQ 
541:	QTHQQEKKEN SSVTGTTATA GSKTVKQQPV TLQHKLFVSV PDYGILKTHG KYVENATFLE 
601:	TAGPVQQIIP LSGLFNATTK PQGFANEFAT QYTSETLRVA VLTSTSIEIY KYRTPDEIFE 
661:	DLIDNPLPFV LNYGAAEACS TALFVTCKSN KSEKLRSNAL TFLTMGIPGV VDIKPVYNRY 
721:	SVSTVSSLLS KPTLSTATTN LQQSITGFSK PSPANKEDFD LDDVILSPRF YGIALLITRL 
781:	LRDIWGRHVF MTFTDNRVTS HAFISSSDPI TPSINNLKSD EISQNRNIIS KVSISKDCIE 
841:	YYLSSINILN EFFITYGDSI SQISAPYVLA NNSNGRVIDK TEEVANQAES IAINAMIKMV 
901:	QSIKEGLSFL NVLYEESEVE GFDNQYLGFK DIISFVSLDV QKDLVKLDFK DLFAPNDKTK 
961:	SLIREILLSI INRNITKGAS IEYTATALQE RCGSFCSASD ILGFRAIEHL RRAKEIGLRN 
1021:	YDSLNYHLKN ATALLEQIVD DLSIEKLKEA VSMMLSVNYY PKSIEFLLNI ANSMDKGKLA 
1081:	CQYVANGFLE NDDRKQYYDK RILVYDLVFD TLIKVDELAE KKQSSKTQNQ ISISNDDEVK 
1141:	LRQKSYEAAL KYNDRLFHYH MYDWLVSQNR EEKLLDIETP FILPYLMEKA GSSLKISNIL 
1201:	WVYYSRRSKF FESAEILYRL ATSNFDITLF ERIEFLSRAN GFCNSVSPLS QKQRIVQLAS 
1261:	RIQDACEVAG IQGDILSLVY TDARIDSAIK DELIKTLDGK ILSTSELFND FAVPLSYHEI 
1321:	ALFIFKIADF RDHEVIMAKW DELFQSLRME FNNTGKKEDS MNFINLLSNV LIKIGKNVQD 
1381:	SEFIFPIFEL FPIVCNFFYE TLPKEHIVSG SIVSIFITAG VSFNKMYYIL KELIETSDSD 
1441:	NSVFNKEMTW LIHEWYKSDR KFRDIISYND IIHLKEYKID NDPIEKYVKN SGNNLGICFY 
1501:	KE