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1.I.1.1.1
Nuclear Pore Complex (NPC) (Tran and Wente, 2006).  The structure of the NPC core (400kD) has been determined at 7.4 Å resolution revealing a curved Y-shaped architecture with the coat nucleoporin interactions forming the central ""triskeleton"".  32 copies of the coat neucloporin complex (CNC) structure dock into the cryoelectron tomographic reconstruction of the assembled human NPC, thus accounting for ~16 MDa of it's mass (Stuwe et al. 2015).  Import of integral membrane proteins (mono- and polytopic) into the the inner nuclear membrane occurs by an active, transport factor-dependent process (Laba et al. 2015). Ndc1 and Pom52 are partially redundant NPC components that are essential for proper assembly of the NPC. The absence of Ndc1p and Pom152p results in aberrant pores that have enlarged diameters and lack proteinaceous material, leading to increased diffusion between the cytoplasm and the nucleus (Madrid et al. 2006). Pom152 is a transmembrane protein within the nuclear pore complex (NPC) of fungi that is important for NPC assembly and structure. Pom152 is comprised of a short amino-terminal region that remains on the cytosolic side of the nuclear envelope (NE) and interacts with NPC proteins, a transmembrane domain, and a large, glycosylated carboxy-terminal domain within the NE lumen. Here we show that the N-terminal 200 amino acids of Pom152 that include only the amino-terminal and transmembrane regions are sufficient for localization to the NPC (Brown et al. 2021). Atg39 selectively captures the inner nuclear membrane into lumenal vesicles for delivery to the autophagosome (Chandra et al. 2021). The inner nuclear membrane (INM) changes its protein composition during gametogenesis, sheding light on mechanisms used to shape the INM proteome of spores (Shelton et al. 2021). Several nucleoporins with FG-repeats (phenylalanine-glycine repeats) (barrier nucleoporins) possess potential amyloidogenic properties (Danilov et al. 2023).  A multiscale structure of the yeast nuclear pore complex has been described, and its implications have been discussed (Akey et al. 2023).  NPCs direct the nucleocytoplasmic transport of macromolecules, and Akey et al. 2023 provided a composite multiscale structure of the yeast NPC, based on improved 3D density maps from cryoEM and AlphaFold2 models. Key features of the inner and outer rings were integrated into a comprehensive model. The authors resolved flexible connectors that tie together the core scaffold, along with equatorial transmembrane complexes and a lumenal ring that anchor this channel within the pore membrane. The organization of the nuclear double outer ring revealed an architecture that may be shared with ancestral NPCs. Additional connections between the core scaffold and the central transporter suggest that under certain conditions, a degree of local organization is present at the periphery of the transport machinery. These connectors may couple conformational changes in the scaffold to the central transporter to modulate transport. Collectively, this analysis provides insights into assembly, transport, and NPC evolution (Akey et al. 2023).

Accession Number:P47054
Protein Name:Nucleoporin NUP192
Length:1683
Molecular Weight:191535.00
Species:Saccharomyces cerevisiae (Baker's yeast) [4932]
Location1 / Topology2 / Orientation3: Nucleus1 / Multi-pass membrane protein2
Substrate

Cross database links:

DIP: DIP-2442N DIP-2442N DIP-2442N DIP-2442N
RefSeq: NP_012495.1   
Entrez Gene ID: 853410   
Pfam: PF11894   
KEGG: sce:YJL039C    sce:YJL039C    sce:YJL039C    sce:YJL039C   

Gene Ontology

GO:0031965 C:nuclear membrane
GO:0005643 C:nuclear pore
GO:0005515 F:protein binding
GO:0017056 F:structural constituent of nuclear pore
GO:0051028 P:mRNA transport
GO:0006999 P:nuclear pore organization
GO:0015031 P:protein transport
GO:0055085 P:transmembrane transport
GO:0006913 P:nucleocytoplasmic transport

References (24)

[1] “Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.”  Galibert F.et.al.   8641269
[2] “Nup192p is a conserved nucleoporin with a preferential location at the inner site of the nuclear membrane.”  Kosova B.et.al.   10428845
[3] “Yeast nuclear pore complex assembly defects determined by nuclear envelope reconstruction.”  Gomez-Ospina N.et.al.   11121302
[4] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[5] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[6] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[7] “Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.”  Galibert F.et.al.   8641269
[8] “Nup192p is a conserved nucleoporin with a preferential location at the inner site of the nuclear membrane.”  Kosova B.et.al.   10428845
[9] “Yeast nuclear pore complex assembly defects determined by nuclear envelope reconstruction.”  Gomez-Ospina N.et.al.   11121302
[10] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[11] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[12] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[13] “Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.”  Galibert F.et.al.   8641269
[14] “Nup192p is a conserved nucleoporin with a preferential location at the inner site of the nuclear membrane.”  Kosova B.et.al.   10428845
[15] “Yeast nuclear pore complex assembly defects determined by nuclear envelope reconstruction.”  Gomez-Ospina N.et.al.   11121302
[16] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[17] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[18] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[19] “Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.”  Galibert F.et.al.   8641269
[20] “Nup192p is a conserved nucleoporin with a preferential location at the inner site of the nuclear membrane.”  Kosova B.et.al.   10428845
[21] “Yeast nuclear pore complex assembly defects determined by nuclear envelope reconstruction.”  Gomez-Ospina N.et.al.   11121302
[22] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[23] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[24] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
Structure:
4IFQ     

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Predict TMSs (Predict number of transmembrane segments)
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FASTA formatted sequence
1:	MKWSAIPFQT LYRSIESGEF DFDLFKEVLP DLQNLNLNTD KLKNNASRSQ LEKGEIELSD 
61:	GSTFKVNQEF IFEAISLSDE LNLDEIVACE LILSGDTTAN NGKVQYFLRR QYILQIVSFI 
121:	VNCFHEDTEL YQELIKNGAL VSNILSAFKF IHTQLSEIKQ QINKAQILEN YNALFQQNIK 
181:	FRRDFLLREY DILSQILYGL VDKGAIMKNK DFILSLLHHV SELDSNDFFI IYYTPAFFHL 
241:	FASLRVLPDA DVKLLHSQFM KDLKDDSIYT KPVKVALIFI FFAYFIGWCK EDPKRRADTM 
301:	DFKTDVDEPM TSAVELGAIE QILIFAADTS IVEQDKSMEL FYDIRSLLER HIPRLIPKQL 
361:	LDDEKIFSQT TNSTYNPASA TDNMSGRGLW NPSYPGMMST TGTARLNSMP NNVNEYSYTT 
421:	IVLSDQTQEF FLSSFDDVLQ TIITDCAFLL TKIKDAEEDS LLSGEDLTLD DISLKADLER 
481:	FFLSIYFFYA SRPEYSCTFW SDKESNAYGF IEWCSRCNDN LMRSCFYLMV SSLSFGPENA 
541:	LNVYHYFGEN SSISWKNIAQ CLSDYTKKIS NFNSSLHKRQ QFSESTHNDI DSTAVALEEG 
601:	LNEEAVIFLS SLLTLVGSVT YQVDEDVKSS LSKVFSDVLF EFTKINTPLV GAAFKVISNL 
661:	VPKLESSRTK FWSFLDSLIF KDSSLNYSSE SYRNAFTNVL TKYSDVLGFL QLFHNLISIH 
721:	SRENNSEYMV FGKLAFPTRL GQGYRKVGIW PYFDYIFNDI LAHVDQIVDI RNKRAVQLPI 
781:	LKIIYTGLCS FDYSVILNSI PAAANLDALV DCENFFNYVQ ECPAIPIFNY IFTEKIYKSI 
841:	FNVVDVGVDQ LSIELEGGKN QAELLQLAVK IINKVLDYQE TYVEELFPIV KKHGKTDYFL 
901:	PKNYSLHGLR SFYDAIFFNI PLVAHLGLYV GVDDQILATN SLRILAKLSE RSNGSVASLS 
961:	KRNKLLTIFD SVDESARIKD AFITQLESSI TDAGVLALKL ELLDFLTSNL SNYSRTMTIS 
1021:	HLLLGFQVSN VISLGPNLAT FISSGTSLLD SLISVLEASL NSITKDNIDY APMRLATAAL 
1081:	EIILKLCRNP LTSGLLYSYL IKENFFERIM ILDPQVTRFT TWNGSPFDNS TEEKCKNFIE 
1141:	SESVGAFLSF LAYRNYWTQY LGLFIHKISF SGTKSEVLTY VNYLISNTMY SVRLFSFLDP 
1201:	LNYGNICEPK ETLSIFTNVP LNLEQVTLNK YCSGNIYDFH KMENLMRLIK RVRAESLHSN 
1261:	SFSLTVSKEQ FLKDADVECI KAKSHFTNII SRNKALELNL SVLHSWVQLV QIIVTDGKLE 
1321:	PSTRSNFILE VFGTIIPKIS DYIEFNITFS EELVSLAVFL FDIYNRDRKL ITDKGTVDGR 
1381:	LYQLFKTCIQ GINSPLSSVA LRSDFYILAN HYLSRVLSDQ VGSEKVLQDL RLGSKKLVEI 
1441:	IWNDVVYGEG TSRVTGILLL DSLIQLANRS KENFILDSLM KTTRLLLIIR SLKNTDALLN 
1501:	STTEHINIDD LLYELTAFKA TVFFLIRVAE TRGGASALIE NNLFRIIAEL SFLKVDPDLG 
1561:	LDLMFDEVYV QNSKFLKVNV TLDNPLLVDK DANGVSLFEL IVPIFQLISA VLVSMGSSNK 
1621:	AVVQTVKGLL NTYKRLVIGI FKRDLLREKE DKKNSSDPNN QSLNEMVKLI VMLCTLTGYQ 
1681:	NND