| |
---|---|
Accession Number: | P49686 |
Protein Name: | Nucleoporin NUP42 |
Length: | 430 |
Molecular Weight: | 42778.00 |
Species: | Saccharomyces cerevisiae (Baker's yeast) [4932] |
Location1 / Topology2 / Orientation3: | Nucleus1 / Peripheral membrane protein2 / Cytoplasmic side3 |
Substrate |
Cross database links:
DIP: | DIP-2313N DIP-2313N DIP-2313N DIP-2313N |
---|---|
RefSeq: | NP_010478.1 |
Entrez Gene ID: | 851774 |
KEGG: | sce:YDR192C sce:YDR192C sce:YDR192C sce:YDR192C |
Gene Ontology
GO:0031965
C:nuclear membrane
GO:0005643
C:nuclear pore
GO:0042802
F:identical protein binding
GO:0005198
F:structural molecule activity
GO:0006406
P:mRNA export from nucleus
GO:0006609
P:mRNA-binding (hnRNP) protein import into nu...
GO:0006607
P:NLS-bearing substrate import into nucleus
GO:0006999
P:nuclear pore organization
GO:0006611
P:protein export from nucleus
GO:0006610
P:ribosomal protein import into nucleus
GO:0006407
P:rRNA export from nucleus
GO:0006408
P:snRNA export from nucleus
GO:0006608
P:snRNP protein import into nucleus
GO:0055085
P:transmembrane transport
GO:0006409
P:tRNA export from nucleus
GO:0031990
P:mRNA export from nucleus in response to heat stress
GO:0016973
P:poly(A)+ mRNA export from nucleus
GO:0000973
P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0015031
P:protein transport
GO:0005515
F:protein binding
| |
References (56)[1] “Identification of a novel nuclear pore-associated protein as a functional target of the HIV-1 Rev protein in yeast.” Stutz F.et.al. 7634338 [2] “The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.” Jacq C.et.al. 9169867 [3] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.” Hu Y.et.al. 17322287 [4] “The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr255p.” Strahm Y.et.al. 10610322 [5] “Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells.” Hodge C.A.et.al. 10523319 [6] “Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export.” Straesser K.et.al. 10952996 [7] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.” Rout M.P.et.al. 10684247 [8] “Nuclear export of heat shock and non-heat-shock mRNA occurs via similar pathways.” Vainberg I.E.et.al. 10805742 [9] “Proteomic analysis of nucleoporin interacting proteins.” Allen N.P.et.al. 11387327 [10] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.” Pyhtila B.et.al. 12917401 [11] “Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.” Denning D.P.et.al. 12604785 [12] “Minimal nuclear pore complexes define FG repeat domains essential for transport.” Strawn L.A.et.al. 15039779 [13] “Peering through the pore: nuclear pore complex structure, assembly, and function.” Suntharalingam M.et.al. 12791264 [14] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.” Albuquerque C.P.et.al. 18407956 [15] “Identification of a novel nuclear pore-associated protein as a functional target of the HIV-1 Rev protein in yeast.” Stutz F.et.al. 7634338 [16] “The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.” Jacq C.et.al. 9169867 [17] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.” Hu Y.et.al. 17322287 [18] “The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr255p.” Strahm Y.et.al. 10610322 [19] “Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells.” Hodge C.A.et.al. 10523319 [20] “Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export.” Straesser K.et.al. 10952996 [21] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.” Rout M.P.et.al. 10684247 [22] “Nuclear export of heat shock and non-heat-shock mRNA occurs via similar pathways.” Vainberg I.E.et.al. 10805742 [23] “Proteomic analysis of nucleoporin interacting proteins.” Allen N.P.et.al. 11387327 [24] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.” Pyhtila B.et.al. 12917401 [25] “Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.” Denning D.P.et.al. 12604785 [26] “Minimal nuclear pore complexes define FG repeat domains essential for transport.” Strawn L.A.et.al. 15039779 [27] “Peering through the pore: nuclear pore complex structure, assembly, and function.” Suntharalingam M.et.al. 12791264 [28] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.” Albuquerque C.P.et.al. 18407956 [29] “Identification of a novel nuclear pore-associated protein as a functional target of the HIV-1 Rev protein in yeast.” Stutz F.et.al. 7634338 [30] “The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.” Jacq C.et.al. 9169867 [31] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.” Hu Y.et.al. 17322287 [32] “The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr255p.” Strahm Y.et.al. 10610322 [33] “Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells.” Hodge C.A.et.al. 10523319 [34] “Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export.” Straesser K.et.al. 10952996 [35] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.” Rout M.P.et.al. 10684247 [36] “Nuclear export of heat shock and non-heat-shock mRNA occurs via similar pathways.” Vainberg I.E.et.al. 10805742 [37] “Proteomic analysis of nucleoporin interacting proteins.” Allen N.P.et.al. 11387327 [38] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.” Pyhtila B.et.al. 12917401 [39] “Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.” Denning D.P.et.al. 12604785 [40] “Minimal nuclear pore complexes define FG repeat domains essential for transport.” Strawn L.A.et.al. 15039779 [41] “Peering through the pore: nuclear pore complex structure, assembly, and function.” Suntharalingam M.et.al. 12791264 [42] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.” Albuquerque C.P.et.al. 18407956 [43] “Identification of a novel nuclear pore-associated protein as a functional target of the HIV-1 Rev protein in yeast.” Stutz F.et.al. 7634338 [44] “The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.” Jacq C.et.al. 9169867 [45] “Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae.” Hu Y.et.al. 17322287 [46] “The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr255p.” Strahm Y.et.al. 10610322 [47] “Rat8p/Dbp5p is a shuttling transport factor that interacts with Rat7p/Nup159p and Gle1p and suppresses the mRNA export defect of xpo1-1 cells.” Hodge C.A.et.al. 10523319 [48] “Binding of the Mex67p/Mtr2p heterodimer to FXFG, GLFG, and FG repeat nucleoporins is essential for nuclear mRNA export.” Straesser K.et.al. 10952996 [49] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.” Rout M.P.et.al. 10684247 [50] “Nuclear export of heat shock and non-heat-shock mRNA occurs via similar pathways.” Vainberg I.E.et.al. 10805742 [51] “Proteomic analysis of nucleoporin interacting proteins.” Allen N.P.et.al. 11387327 [52] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.” Pyhtila B.et.al. 12917401 | |
Structure: | |
External Searches:
|
Analyze:
Predict TMSs (Predict number of transmembrane segments) | ||||
FASTA formatted sequence |
|
1: MSAFGNPFTS GAKPNLSNTS GINPFTNNAA STNNMGGSAF GRPSFGTANT MTGGTTTSAF 61: GMPQFGTNTG NTGNTSISAF GNTSNAAKPS AFGAPAFGSS APINVNPPST TSAFGAPSFG 121: STGFGAMAAT SNPFGKSPGS MGSAFGQPAF GANKTAIPSS SVSNSNNSAF GAASNTPLTT 181: TSPFGSLQQN ASQNASSTSS AFGKPTFGAA TNTQSPFGTI QNTSTSSGTG VSPFGTFGTN 241: SNNKSPFSNL QSGAGAGSSP FGTTTSKANN NNNVGSSAFG TTNNQSPFSG GSGGTFGSAS 301: NLNKNTNGNF QSSFGNKGFS FGITPQNDAN KVSQSNPSFG QTMPNTDPNI SLKSNGNATS 361: FGFGQQQMNA TNVNANTATG KIRFVQGLSS EKDGILELAD LAEETLKIFR ANKFELGLVP 421: DIPPPPALVA