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1.I.1.1.1
Nuclear Pore Complex (NPC) (Tran and Wente, 2006).  The structure of the NPC core (400kD) has been determined at 7.4 Å resolution revealing a curved Y-shaped architecture with the coat nucleoporin interactions forming the central ""triskeleton"".  32 copies of the coat neucloporin complex (CNC) structure dock into the cryoelectron tomographic reconstruction of the assembled human NPC, thus accounting for ~16 MDa of it's mass (Stuwe et al. 2015).  Import of integral membrane proteins (mono- and polytopic) into the the inner nuclear membrane occurs by an active, transport factor-dependent process (Laba et al. 2015). Ndc1 and Pom52 are partially redundant NPC components that are essential for proper assembly of the NPC. The absence of Ndc1p and Pom152p results in aberrant pores that have enlarged diameters and lack proteinaceous material, leading to increased diffusion between the cytoplasm and the nucleus (Madrid et al. 2006). Pom152 is a transmembrane protein within the nuclear pore complex (NPC) of fungi that is important for NPC assembly and structure. Pom152 is comprised of a short amino-terminal region that remains on the cytosolic side of the nuclear envelope (NE) and interacts with NPC proteins, a transmembrane domain, and a large, glycosylated carboxy-terminal domain within the NE lumen. Here we show that the N-terminal 200 amino acids of Pom152 that include only the amino-terminal and transmembrane regions are sufficient for localization to the NPC (Brown et al. 2021). Atg39 selectively captures the inner nuclear membrane into lumenal vesicles for delivery to the autophagosome (Chandra et al. 2021). The inner nuclear membrane (INM) changes its protein composition during gametogenesis, sheding light on mechanisms used to shape the INM proteome of spores (Shelton et al. 2021). Several nucleoporins with FG-repeats (phenylalanine-glycine repeats) (barrier nucleoporins) possess potential amyloidogenic properties (Danilov et al. 2023).  A multiscale structure of the yeast nuclear pore complex has been described, and its implications have been discussed (Akey et al. 2023).  NPCs direct the nucleocytoplasmic transport of macromolecules, and Akey et al. 2023 provided a composite multiscale structure of the yeast NPC, based on improved 3D density maps from cryoEM and AlphaFold2 models. Key features of the inner and outer rings were integrated into a comprehensive model. The authors resolved flexible connectors that tie together the core scaffold, along with equatorial transmembrane complexes and a lumenal ring that anchor this channel within the pore membrane. The organization of the nuclear double outer ring revealed an architecture that may be shared with ancestral NPCs. Additional connections between the core scaffold and the central transporter suggest that under certain conditions, a degree of local organization is present at the periphery of the transport machinery. These connectors may couple conformational changes in the scaffold to the central transporter to modulate transport. Collectively, this analysis provides insights into assembly, transport, and NPC evolution (Akey et al. 2023).

Accession Number:Q02629
Protein Name:Nucleoporin NUP100/NSP100
Length:959
Molecular Weight:99988.00
Species:Saccharomyces cerevisiae (Baker's yeast) [4932]
Location1 / Topology2 / Orientation3: Nucleus1 / Peripheral membrane protein2 / Cytoplasmic side3
Substrate

Cross database links:

DIP: DIP-2351N DIP-2351N DIP-2351N DIP-2351N
RefSeq: NP_012855.1   
Entrez Gene ID: 853796   
Pfam: PF04096   
KEGG: sce:YKL068W    sce:YKL068W    sce:YKL068W    sce:YKL068W   

Gene Ontology

GO:0031965 C:nuclear membrane
GO:0005643 C:nuclear pore
GO:0042802 F:identical protein binding
GO:0005198 F:structural molecule activity
GO:0006406 P:mRNA export from nucleus
GO:0006609 P:mRNA-binding (hnRNP) protein import into nu...
GO:0006607 P:NLS-bearing substrate import into nucleus
GO:0006999 P:nuclear pore organization
GO:0006611 P:protein export from nucleus
GO:0006610 P:ribosomal protein import into nucleus
GO:0006407 P:rRNA export from nucleus
GO:0006408 P:snRNA export from nucleus
GO:0006608 P:snRNP protein import into nucleus
GO:0055085 P:transmembrane transport
GO:0006409 P:tRNA export from nucleus
GO:0031990 P:mRNA export from nucleus in response to heat stress
GO:0000973 P:posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0015031 P:protein transport
GO:0005515 F:protein binding

References (68)

[1] “A new family of yeast nuclear pore complex proteins.”  Wente S.R.et.al.   1385442
[2] “Sequence of a 20.7 kb region of yeast chromosome XI includes the NUP100 gene, an open reading frame (ORF) possibly representing a nucleoside diphosphate kinase gene, tRNAs for His, Val and Trp in addition to seven ORFs with weak or no significant similarity to known proteins.”  Rasmussen S.W.et.al.   8091863
[3] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[4] “Nup145p is required for nuclear export of mRNA and binds homopolymeric RNA in vitro via a novel conserved motif.”  Fabre E.et.al.   8044840
[5] “The GLFG repetitive region of the nucleoporin Nup116p interacts with Kap95p, an essential yeast nuclear import factor.”  Iovine M.K.et.al.   8557738
[6] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[7] “The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex.”  Strawn L.A.et.al.   11104765
[8] “Proteomic analysis of nucleoporin interacting proteins.”  Allen N.P.et.al.   11387327
[9] “GLFG and FxFG nucleoporins bind to overlapping sites on importin-beta.”  Bayliss R.et.al.   12372823
[10] “Deciphering networks of protein interactions at the nuclear pore complex.”  Allen N.P.et.al.   12543930
[11] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.”  Pyhtila B.et.al.   12917401
[12] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[13] “Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.”  Denning D.P.et.al.   12604785
[14] “Minimal nuclear pore complexes define FG repeat domains essential for transport.”  Strawn L.A.et.al.   15039779
[15] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[16] “Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.”  Li X.et.al.   17330950
[17] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[18] “A new family of yeast nuclear pore complex proteins.”  Wente S.R.et.al.   1385442
[19] “Sequence of a 20.7 kb region of yeast chromosome XI includes the NUP100 gene, an open reading frame (ORF) possibly representing a nucleoside diphosphate kinase gene, tRNAs for His, Val and Trp in addition to seven ORFs with weak or no significant similarity to known proteins.”  Rasmussen S.W.et.al.   8091863
[20] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[21] “Nup145p is required for nuclear export of mRNA and binds homopolymeric RNA in vitro via a novel conserved motif.”  Fabre E.et.al.   8044840
[22] “The GLFG repetitive region of the nucleoporin Nup116p interacts with Kap95p, an essential yeast nuclear import factor.”  Iovine M.K.et.al.   8557738
[23] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[24] “The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex.”  Strawn L.A.et.al.   11104765
[25] “Proteomic analysis of nucleoporin interacting proteins.”  Allen N.P.et.al.   11387327
[26] “GLFG and FxFG nucleoporins bind to overlapping sites on importin-beta.”  Bayliss R.et.al.   12372823
[27] “Deciphering networks of protein interactions at the nuclear pore complex.”  Allen N.P.et.al.   12543930
[28] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.”  Pyhtila B.et.al.   12917401
[29] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[30] “Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.”  Denning D.P.et.al.   12604785
[31] “Minimal nuclear pore complexes define FG repeat domains essential for transport.”  Strawn L.A.et.al.   15039779
[32] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[33] “Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.”  Li X.et.al.   17330950
[34] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[35] “A new family of yeast nuclear pore complex proteins.”  Wente S.R.et.al.   1385442
[36] “Sequence of a 20.7 kb region of yeast chromosome XI includes the NUP100 gene, an open reading frame (ORF) possibly representing a nucleoside diphosphate kinase gene, tRNAs for His, Val and Trp in addition to seven ORFs with weak or no significant similarity to known proteins.”  Rasmussen S.W.et.al.   8091863
[37] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[38] “Nup145p is required for nuclear export of mRNA and binds homopolymeric RNA in vitro via a novel conserved motif.”  Fabre E.et.al.   8044840
[39] “The GLFG repetitive region of the nucleoporin Nup116p interacts with Kap95p, an essential yeast nuclear import factor.”  Iovine M.K.et.al.   8557738
[40] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[41] “The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex.”  Strawn L.A.et.al.   11104765
[42] “Proteomic analysis of nucleoporin interacting proteins.”  Allen N.P.et.al.   11387327
[43] “GLFG and FxFG nucleoporins bind to overlapping sites on importin-beta.”  Bayliss R.et.al.   12372823
[44] “Deciphering networks of protein interactions at the nuclear pore complex.”  Allen N.P.et.al.   12543930
[45] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.”  Pyhtila B.et.al.   12917401
[46] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[47] “Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.”  Denning D.P.et.al.   12604785
[48] “Minimal nuclear pore complexes define FG repeat domains essential for transport.”  Strawn L.A.et.al.   15039779
[49] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[50] “Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.”  Li X.et.al.   17330950
[51] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956
[52] “A new family of yeast nuclear pore complex proteins.”  Wente S.R.et.al.   1385442
[53] “Sequence of a 20.7 kb region of yeast chromosome XI includes the NUP100 gene, an open reading frame (ORF) possibly representing a nucleoside diphosphate kinase gene, tRNAs for His, Val and Trp in addition to seven ORFs with weak or no significant similarity to known proteins.”  Rasmussen S.W.et.al.   8091863
[54] “Complete DNA sequence of yeast chromosome XI.”  Dujon B.et.al.   8196765
[55] “Nup145p is required for nuclear export of mRNA and binds homopolymeric RNA in vitro via a novel conserved motif.”  Fabre E.et.al.   8044840
[56] “The GLFG repetitive region of the nucleoporin Nup116p interacts with Kap95p, an essential yeast nuclear import factor.”  Iovine M.K.et.al.   8557738
[57] “The yeast nuclear pore complex: composition, architecture, and transport mechanism.”  Rout M.P.et.al.   10684247
[58] “The GLFG regions of Nup116p and Nup100p serve as binding sites for both Kap95p and Mex67p at the nuclear pore complex.”  Strawn L.A.et.al.   11104765
[59] “Proteomic analysis of nucleoporin interacting proteins.”  Allen N.P.et.al.   11387327
[60] “GLFG and FxFG nucleoporins bind to overlapping sites on importin-beta.”  Bayliss R.et.al.   12372823
[61] “Deciphering networks of protein interactions at the nuclear pore complex.”  Allen N.P.et.al.   12543930
[62] “A gradient of affinity for the karyopherin Kap95p along the yeast nuclear pore complex.”  Pyhtila B.et.al.   12917401
[63] “Global analysis of protein expression in yeast.”  Ghaemmaghami S.et.al.   14562106
[64] “Disorder in the nuclear pore complex: the FG repeat regions of nucleoporins are natively unfolded.”  Denning D.P.et.al.   12604785
[65] “Minimal nuclear pore complexes define FG repeat domains essential for transport.”  Strawn L.A.et.al.   15039779
[66] “Peering through the pore: nuclear pore complex structure, assembly, and function.”  Suntharalingam M.et.al.   12791264
[67] “Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae.”  Li X.et.al.   17330950
[68] “A multidimensional chromatography technology for in-depth phosphoproteome analysis.”  Albuquerque C.P.et.al.   18407956

External Searches:

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Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
FASTA formatted sequence
1:	MFGNNRPMFG GSNLSFGSNT SSFGGQQSQQ PNSLFGNSNN NNNSTSNNAQ SGFGGFTSAA 
61:	GSNSNSLFGN NNTQNNGAFG QSMGATQNSP FGSLNSSNAS NGNTFGGSSS MGSFGGNTNN 
121:	AFNNNSNSTN SPFGFNKPNT GGTLFGSQNN NSAGTSSLFG GQSTSTTGTF GNTGSSFGTG 
181:	LNGNGSNIFG AGNNSQSNTT GSLFGNQQSS AFGTNNQQGS LFGQQSQNTN NAFGNQNQLG 
241:	GSSFGSKPVG SGSLFGQSNN TLGNTTNNRN GLFGQMNSSN QGSSNSGLFG QNSMNSSTQG 
301:	VFGQNNNQMQ INGNNNNSLF GKANTFSNSA SGGLFGQNNQ QQGSGLFGQN SQTSGSSGLF 
361:	GQNNQKQPNT FTQSNTGIGL FGQNNNQQQQ STGLFGAKPA GTTGSLFGGN SSTQPNSLFG 
421:	TTNVPTSNTQ SQQGNSLFGA TKLTNMPFGG NPTANQSGSG NSLFGTKPAS TTGSLFGNNT 
481:	ASTTVPSTNG LFGNNANNST STTNTGLFGA KPDSQSKPAL GGGLFGNSNS NSSTIGQNKP 
541:	VFGGTTQNTG LFGATGTNSS AVGSTGKLFG QNNNTLNVGT QNVPPVNNTT QNALLGTTAV 
601:	PSLQQAPVTN EQLFSKISIP NSITNPVKAT TSKVNADMKR NSSLTSAYRL APKPLFAPSS 
661:	NGDAKFQKWG KTLERSDRGS STSNSITDPE SSYLNSNDLL FDPDRRYLKH LVIKNNKNLN 
721:	VINHNDDEAS KVKLVTFTTE SASKDDQASS SIAASKLTEK AHSPQTDLKD DHDESTPDPQ 
781:	SKSPNGSTSI PMIENEKISS KVPGLLSNDV TFFKNNYYIS PSIETLGNKS LIELRKINNL 
841:	VIGHRNYGKV EFLEPVDLLN TPLDTLCGDL VTFGPKSCSI YENCSIKPEK GEGINVRCRV 
901:	TLYSCFPIDK ETRKPIKNIT HPLLKRSIAK LKENPVYKFE SYDPVTGTYS YTIDHPVLT