TCDB is operated by the Saier Lab Bioinformatics Group
TCIDNameDomainKingdom/PhylumProtein(s)
1.R.2.1.1









The BLTP3B protein of 1464 aas and 0 - 2 TMSs. Also called the SHIP164 protein.  BLTP3B or SHIP164 is of 1464 aas and 0 - 2 TMSs. It is a tube-forming lipid transport protein which mediates the transfer of lipids between membranes at organelle contact sites and is required for retrograde trafficing of vesicle clusters in the early endocytic pathway to the Golgi complex (Otto et al. 2010). Cellular membranes differ in protein and lipid compositions as well as in the protein-lipid ratio. Progression of membranous organelles along traffic routes requires mechanisms to control bilayer lipid chemistry and their abundance relative to proteins. Structural and functional characterization of VPS13-family proteins has suggested a mechanism through which lipids can be transferred in bulk from one membrane to another at membrane contact sites, and thus independently of vesicular traffic. Hanna et al. 2022 showed that SHIP164 (UHRF1BP1L) shares structural and lipid transfer properties with these proteins and is localized on a subpopulation of vesicle clusters in the early endocytic pathway whose membrane cargo includes the cation-independent mannose- 6-phosphate receptor (MPR). Loss of SHIP164 disrupts retrograde traffic of these organelles to the Golgi complex. These findings raise the possibility that bulk transfer of lipids to endocytic membranes may play a role in their traffic (Hanna et al. 2022).

Eukaryota
Metazoa, Chordata
BLTP3B of Homo sapiens
1.R.2.1.2









Bridge-like lipid transfer protein family member 3A, BLTP3A, of 1440 aas and 0 - 2 TMSs.

Eukaryota
Metazoa, Chordata
BLTP3A of Homo sapiens
1.R.2.1.3









Intermembrane lipid transfer protein Vps13A; Vacuolar protein sorting-associated protein 13A of 3373 aas.  The Vps13-like protein BLTP2 is pro-survival and regulates phosphatidylethanolamine levels in the plasma membrane to maintain its fluidity and function (Banerjee et al. 2024).

Eukaryota
Evosea
Vps13A of Dictyostelium discoideum
1.R.2.1.4









Intermembrane lipid transfer protein, VPS13B, of 4022 aas. Mediates the transfer of lipids between membranes at organelle contact sites and binds phosphatidylinositol 3-phosphate.
It functions as a tethering factor in the slow endocytic recycling pathway, to assist traffic between early and recycling endosomes (Koike and Jahn 2019, Duplomb et al. 2014, Lee et al. 2020). It is involved in the transport of proacrosomal vesicles to the nuclear dense lamina (NDL) during spermatid development, and plays a role in the assembly of the Golgi apparatus, possibly by mediating trafficking to the Golgi membrane (Seifert et al. 2011). It plays a role in the development of the nervous system, and may be required for neuron projection development (Seifert et al. 2015, Lee et al. 2020). The pathologic mechanism underlying the expansion of the neurodevelopmental spectrum in Cohen syndrome (CS) due to mutations in VPS13B, highlight the importance of Golgi and Golgi-membrane-related proteins in the development of neurodevelopmental syndromes associated with early-onset non-channelopathy epilepsy (AbdelAleem et al. 2023).  Variants can cause neurodevelopmental disorders (Afridi et al. 2024).

Eukaryota
Metazoa, Chordata
VPS13B of Homo sapiens
1.R.2.1.5









Intermembrane lipid transfer protein, Vps13, of 3321 aas, also called vacuolar protein sorting-associated protein 13.

Eukaryota
Metazoa, Arthropoda
Vps13 of Drosophila melanogaster (fruit fly)
1.R.2.1.6









The chorcin (VPS13A) protein of 3174 aas and possibly several central TMSs. See family description for details of its function. The N-terminal region shows appreciable sequence similarity with members of the APT family (TC#9.A.15).  Erythroid differentiation is dependent on interactions of VPS13A with XK at the plasma membrane of K562 cells (Amos et al. 2023).

Eukaryota
Metazoa, Chordata
Chorcin of Homo sapiens