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1.A.61.1.1
Chain F or gamma-peptide (44aas; 1TMS), membrane active domain (Bong et al., 1999)

Accession Number:P12871
Protein Name:Chain F
Length:399
Molecular Weight:43067.00
Species:Nodamura virus (NoV) [12288]
Number of TMSs:1
Location1 / Topology2 / Orientation3: Virion1
Substrate small molecules, ions, Nucleocapsid subunits

Cross database links:

RefSeq: NP_077732.1   
Entrez Gene ID: 962119   
Pfam: PF01829   

Gene Ontology

GO:0019028 C:viral capsid
GO:0004190 F:aspartic-type endopeptidase activity
GO:0006508 P:proteolysis

References (3)

[1] “Nucleotide sequences of three Nodavirus RNA2's: the messengers for their coat protein precursors.”  Dasgupta R.et.al.   2798110
[2] “Structural homology among four nodaviruses as deduced by sequencing and X-ray crystallography.”  Kaesberg P.et.al.   2116525
[3] “Resolution of space-group ambiguity and the structure determination of nodamura virus to 3.3-A resolution from pseudo-R32 (monoclinic) crystals.”  Zlotnick A.et.al.   15299863
Structure:
1NOV     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
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FASTA formatted sequence
1:	MVSKAARRRR AAPRQQQRQQ SNRASNQPRR RRARRTRRQQ RMAATNNMLK MSAPGLDFLK 
61:	CAFASPDFST DPGKGIPDKF QGLVLPKKHC LTQSITFTPG KQTMLLVAPI PGIACLKAEA 
121:	NVGASFSGVP LASVEFPGFD QLFGTSATDT AANVTAFRYA SMAAGVYPTS NLMQFAGSIQ 
181:	VYKIPLKQVL NSYSQTVATV PPTNLAQNTI AIDGLEALDA LPNNNYSGSF IEGCYSQSVC 
241:	NEPEFEFHPI MEGYASVPPA NVTNAQASMF TNLTFSGARY TGLGDMDAIA ILVTTPTGAV 
301:	NTAVLKVWAC VEYRPNPNST LYEFARESPA NDEYALAAYR KIARDIPIAV ACKDNATFWE 
361:	RVRSILKSGL NFASTIPGPV GVAATGIKGI IETIGSLWV