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1.G.4.1.3
The Barmah Forest virus 6K protein (58 aas; present within the viral structural polyprotein (P89946))

Accession Number:P89946
Protein Name:Structural polyprotein
Length:1239
Molecular Weight:136297.00
Species:Barmah forest virus (BFV) [11020]
Number of TMSs:6
Location1 / Topology2 / Orientation3: Host cell membrane1 / Multi-pass membrane protein2
Substrate small molecules

Cross database links:

RefSeq: NP_054024.1   
Entrez Gene ID: 1489701   
Pfam: PF01589    PF00943    PF01563    PF00944   

Gene Ontology

GO:0030430 C:host cell cytoplasm
GO:0020002 C:host cell plasma membrane
GO:0016021 C:integral to membrane
GO:0019028 C:viral capsid
GO:0019031 C:viral envelope
GO:0055036 C:virion membrane
GO:0004252 F:serine-type endopeptidase activity
GO:0005198 F:structural molecule activity
GO:0006508 P:proteolysis
Structure:
2YEW     

External Searches:

  • Search: DB with
  • BLAST ExPASy (Swiss Institute of Bioinformatics (SIB) BLAST)
  • CDD Search (Conserved Domain Database)
  • Search COGs (Clusters of Orthologous Groups of proteins)
  • 2° Structure (Network Protein Sequence Analysis)

Analyze:

Predict TMSs (Predict number of transmembrane segments)
Window Size: Angle:  
Window Size: Angle:  
FASTA formatted sequence
1:	MDFIPTQTFY GRRWRPAPVQ RYIPQPQPPA PPRRRRGPSQ LQQLVAALGA LALQPKQKQK 
61:	RAQKKPKKTP PPKPKKTQKP KKPTQKKKSK PGKRMRNCMK IENDCIFPVM LDGKVNGYAC 
121:	LVGDKVMKPA HVKGTIDNPE LAKLTFKKSS KYDLECAQVP VCMKSDASKF THEKPEGHYN 
181:	WHHGAVQFSN GRFTIPTGSG KPGDSGRPIF DNTGKVVAIV LGGANEGART ALSVVTWNKD 
241:	MVTRITPEES VEWSAAALNI TALCVLQNLS FPCDAPPCAP CCYEKDPAGT LRLLSDHYYH 
301:	PKYYELLDST MHCPQGRRPK RSVAHFEAYK ATRPYIGWCA DCGLAGSCPS PVSIEHVWSD 
361:	ADDGVLKIQV SMQIGIAKSN TINHAKIRYM GANGVQEAER STLSVSTTAP CDILATMGHF 
421:	ILARCRPGSQ VEVSLSTDPK LLCRTPFSHK PRFIGNEKSP APTGHKTRIP CKTYSHQTDL 
481:	TREEITMHVP PDVPIQGLVS NTGKSYSLDP KTKTIKYKCT CGETVKEGTA TNKITLFNCD 
541:	TAPKCITYAV DNTVWQYNSQ YVPRSEVTEV KGKIHVPFPL TDSTCAVSVA PEPQVTYRLG 
601:	EVEFHFHPMY PTLFSIRSLG KDPSHSQEWI DTPMSKTIQV GAEGVEYVWG NNNPVRLWAQ 
661:	KSSSSSAHGN PISIVSHYYD LYPYWTITVL ASLGLLIVIS SGFSCFLCSV ARTKCLTPYQ 
721:	LAPGAQLPTF IALLCCAKSA RADTLDDFSY LWTNNQAMFW LQLASPVAAF LCLSYCCRNL 
781:	ACCMKIFLGI SGLCVIATQA YEHSTTMPNQ VGIPFKALIE RPGYAGLPLS LVVIKSELVP 
841:	SLVQDYITCN YKTVVPSPYI KCCGGAECSH KNEADYKCSV FTGVYPFMWG GAYCFCDTEN 
901:	SQMSEVYVTR GESCEADHAI AYQVHTASLK AQVMISIGEL NQTVDVFVNG DSPARIQQSK 
961:	FILGPISSAW SPFDHKVIVY RDEVYNEDYA PYGSGQAGRF GDIQSRTVNS TDVYANTNLK 
1021:	LKRPASGNVH VPYTQTPSGF SYWKKEKGVP LNRNAPFGCI IKVNPVRAEN CVYGNIPISM 
1081:	DIADAHFTRI DESPSVSLKA CEVQSCTYSS DFGGVASISY TSNKVGKCAI HSHSNSATMK 
1141:	DSVQDVQESG ALSLFFATSS VEPNFVVQVC NARITCHGKC EPPKDHIVPY AAKHNDAEFP 
1201:	SISTTAWQWL AHTTSGPLTI LVVAIIVVVV VSIVVCARH