2.A.23 The Dicarboxylate/Amino Acid:Cation (Na⁺ or H⁺) Symporter (DAACS) Family

The members of the DAACS family catalyze Na⁺ and/or H⁺ symport together with (a) a Krebs cycle dicarboxylate (malate, succinate, or fumarate), (b) a dicarboxylic amino acid (glutamate or aspartate), (c) a small, semipolar, neutral amino acid (Ala, Ser, Cys, Thr), (d) both neutral and acidic amino acids or (e) most zwitterionic and dibasic amino acids. The bacterial members are of about 450 (420-491) amino acyl residues while the mammalian proteins are of about 550 (503-574) residues in length. These proteins possess between ten and twelve hydrophobic segments per polypeptide chain. Two of them, human EAAT2 (TC #2.A.23.2.2) and E. coli GltP (TC #2.A.23.1.1) have been shown to be homotrimers (Gendreau et al., 2004). A specific topological model in which 7 α-helical TMSs are followed by a reentrant loop-pore structure followed by one final TMS is presented in Slotboom et al. (1999) and Leighton et al. (2002). Possibly, the transporter consists of eight TMSs, and one or two pore-loop structures that dip into the membrane (one between TMSs 6 and 7, the other between TMSs 7 and 8) in a fashion reminiscent of pore-loop structures found in VIC family ion channels (TC#1.A.1) (Grunewald et al., 2002).

All of the bacterial proteins cluster together on the phylogenetic tree as do the mammalian proteins. The mammalian permeases that transport neutral amino acids cluster separately from those that are specific for the acidic amino acids. Among the mammalian proteins are neuronal excitatory amino acid neurotransmitter permeases. One of these (the GLT-1 L-glutamate/L-aspartate/D-aspartate transporter) has been shown to cotransport the neurotransmitter with 3 Na⁺ and 1 H⁺ and to countertransport 1 K⁺. The EAAT3 carrier (also called the EAAC1 carrier) uses Arg-447 to bind dicarboxylic amino acids in the presence of K⁺ but not monocarboxylic amino acids (Bendahan et al., 2001). Larsson et al. (2010) have identified the 3rd Na⁺ binding site and provided evidence for the mechanism of transport.

Some members of the DAACS family from animals, such as EAAT1, EAAT2, EAAT3 and EAAT4, can apparently be induced to function in a 'channel mode' wherein the transporter allows ion passage without being coupled to substrate translocation. This effect may involve a chloride-permeable, anion-selective channel. Some evidence suggests that the N- and C-termini of EAAT3 as well as two histidyl residues (in EAAT4) in the extracellular loop between TMSs 3 and 4 play a role in conversion to the channel mode (Li et al., 2000). The loop between TMSs 3 and 4 functions to allow regulation of this current by Zn²⁺ (Mitrovic et al., 2001). Distinct conformational states mediate carrier versus channel function, and a dynamic equilibrium exists between the two forms (Borre et al., 2002; Ryan et al., 2002). It is possible to isolate anion permeability mutants in TMS2 that show no change in glutamate transport (Ryan et al., 2004). EAAT4 but not EAAT2 anion channels display voltage-dependent gating that is modified by glutamate (Melzer et al., 2003). Possibly the channel activity is related to their trimeric structures (Gendreau et al., 2004). Torres-Salazar and Fahlke (2007) have reported that neuronal glutamate transporters (EAATs) vary in substrate transport rate but not in unitary anion channel conductance.

The 3-D structure of a member of the DAACS family has been determined (Boudker et al., 2007; Yernool et al., 2004). The putative transporter is a bowl-shaped trimer with a solvent-filled extracellular basin extending halfway across the membrane bilayer. Each protomer harbors 8 TMSs and two reentrant helical hairpins. At the bottom of the basin are three independent binding sites, each cradled by two helical hairpins, reaching from opposite sides of the membrane. There are 3 independent translocation pathways. The first six transmembrane segments form a distorted 'amino-terminal cylinder' and provide all interprotomer contacts, whereas transmembrane segments TM7 and TM8, together with hairpins HP1 and HP2, coalesce to form a highly conserved core within the amino-terminal cylinder. It is proposed that transport of aspartate or glutamate is achieved by movements of the hairpins that allow alternating access to either side of the membrane. Helical hairpin 2 is the extracellular gate that controls access of aspartate and the ions to the internal binding site (Boudker et al., 2007). Molecular simulations have provided evidence for the substrate translocation pathway (Gu et al., 2009). The central cavity in trimeric glutamate transporters restricts ligand diffusion (Leary et al., 2011).

The generalized transport reaction catalyzed by members of the DAACS family is:

substrate (dicarboxylate or amino acid) (out) + nM⁺ [M⁺ = H⁺ or Na⁺] (out) →
substrate (in) + nM⁺ (in).