TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
1.A.50.1.1 | Phospholamban (PLB or PLN) pentameric Ca2+/K+ channel (Kovacs et al., 1988; Smeazzetto et al. 2013; Smeazzetto et al. 2014). In spite of extensive experimental evidence, suggesting a pore size of 2.2 Å, the conclusion of ion channel activity for phospholamban has been questioned (Maffeo and Aksimentiev 2009). Phosphorylation by protein kinase A and dephosphorylation by protein phosphatase 1 modulate the inhibitory activity of phospholamban (PLN), the endogenous regulator of the sarco(endo)plasmic reticulum calcium Ca2+ ATPase (SERCA). This cyclic mechanism constitutes the driving force for calcium reuptake from the cytoplasm into the myocyte lumen, regulating cardiac contractility. PLN undergoes a conformational transition between a relaxed (R) and tense (T) state, an equilibrium perturbed by the addition of SERCA. Phosphoryl transfer to Ser16 induces a conformational switch to the R state. The binding affinity of PLN to SERCA is not affected ((Kd ~ 60 μM). However, the binding surface and dynamics in domain Ib (residues 22-31) change substantially upon phosphorylation. Since PLN can be singly or doubly phosphorylated at Ser16 and Thr17, these sites may remotely control the conformation of domain Ib (Traaseth et al. 2006). Phospholamban interests with SERCA with conformational memory (Smeazzetto et al. 2017). Under physiological conditions, PLB phosphorylation induces little or no change in the interaction of the TMS with SERCA, so relief of inhibition is predominantly due to the structural shift in the cytoplasmic domain (Martin et al. 2018). The phospholamban pentamer alters the function of the sarcoplasmic reticulum calcium pump, SERCA (Glaves et al. 2019). PLB phosphorylation serves as an allosteric molecular switch that releases inhibitory contacts and strings together the catalytic elements required for SERCA activation (Aguayo-Ortiz and Espinoza-Fonseca 2020). | Eukaryota |
Metazoa, Chordata | PLB of Homo sapiens (P26678) |
1.A.50.1.2 | Cardiac phospholamban-like protein of 131 aas and 1 TMS. | Eukaryota |
Metazoa, Chordata | Phospholamban of Scleropages formosus |
1.A.50.1.3 | Cardiac phospholamban isoform X1 of 55 aas and 1 TMS. | Eukaryota |
Metazoa, Chordata | Phospholamban of Esox lucius (northern pike) |
1.A.50.1.4 | Uncharacterized protein of 101 aas and 1 C-terminal TMS. | Eukaryota |
Metazoa, Chordata | UP of Acipenser ruthenus (sterlet) |
1.A.50.2.1 | Sarcolipin (SLN) anion pore-forming protein of 31 aas and 1 TMS, with selectivity for Cl- and H2PO4-. Oligomeric interactions of sarcolipin and the Ca-ATPase have been documented (Autry et al., 2011). Sarcolipin, but not phospholamban, promotes uncoupling of the SERCA pump (3.A.3.2.7; Sahoo et al. 2013). SNL forms pentameric pores that can transport water, H+, Na+, Ca2+ and Cl-. Leu21 serves as the gate (Cao et al. 2015). In the channel, water molecules near the Leu21 pore demonstrated a clear hydrated-dehydrated transition (Cao et al. 2016). Small ankyrin 1 (sAnk1; TC#8.A.28.1.2) and SLN interact with each other in their transmembrane domains to regulate SERCA (TC# 3.A.3.2.7) (Desmond et al. 2017). The TM voltage has a positive effect on the permeability of water molecules and ions (Cao et al. 2020). The conserved C-terminus is an essential element required for the dynamic control of SLN regulatory function (Aguayo-Ortiz et al. 2020). | Eukaryota |
Metazoa, Chordata | SLN of Homo sapiens (O00631) |
1.A.50.2.2 | Sarcolipin protein of 32 aas and 1 TMS. | Eukaryota |
Metazoa, Chordata | Sarcolipin of Esox lucius (northern pike) |
1.A.50.2.3 | Sarcolipin-like protein (SLN) of 31 aas and 1 TMS. This protein is homologous to a region of several proteins in the DMT family (e.g., TC# 2.A.7.24.10). | Eukaryota |
Metazoa, Chordata | SLN of Ovis aries (Sheep) |
1.A.50.2.4 | Uncharacterized protein of 205 aas and 2 C-terminal TMSs | Eukaryota |
Metazoa, Chordata | UP of Etheostoma spectabile (orangethroat darter) |
1.A.50.2.5 | Sarcoplipin of 119 aas and 1 C-terminal TMS | Eukaryota |
Metazoa, Chordata | Sarcolipin of Equus asinus (ass) |
1.A.50.3.1 | Myoregulin of 46 aas and 1 C-terminal TMS (Anderson et al. 2015). Myoregulin (MLN) is a member of the regulin family, a group of homologous membrane proteins that bind to and regulate the activity of the sarcoplasmic reticulum Ca2+-ATPase (SERCA). MLN, which is expressed in skeletal muscle, contains an acidic residue in its transmembrane domain. The location of this residue, Asp35, is unusual. Asp35 controls SERCA inhibition by populating a bound-like orientation of MLN. Liu et al. 2023 proposed that Asp35 provides a functional advantage over other members of the regulin family by populating preexisting MLN conformations required for MLN-specific regulation of SERCA. | Eukaryota |
Metazoa, Chordata | Myoregulin of Homo sapiens |
1.A.50.3.2 | Myoregulin of 43 aas and 1 C-terminal TMS. | Eukaryota |
Metazoa, Chordata | Myoregulin of Echinops telfairi |
1.A.50.3.3 | Myoregulin of 105 aas and one C-terminal TMS. | Eukaryota |
Metazoa, Chordata | Myoregulin of Sarcophilus harrisii (Tasmanian devil) (Sarcophilus laniarius) |
1.A.50.4.1 | DWORF of 34 aas and 1 TMS (Nelson et al. 2016). Counteracts the inhibitory effects of single transmembrane peptides, phospholamban (TC# 1.A.50.1), sarcolipin (1.A.50.2) and myoregulin (1.A.50.3), on SERCA (TC# 3.A.3.2). DWORF also activates SERCA in the absence of PLM (Li et al. 2021). Homology with the inhibitory peptides has been established for these peptides, all of which have about the same size with a single C-terminal TMS (D. Tyler & M. Saier, unpublished results). These single-pass membrane proteins are called regulins. Unlike other regulins, dwarf open reading frame (DWORF) expressed in cardiac muscle has a unique activating effect. Reddy et al. 2021 determined the structure and topology of DWORF in lipid bilayers using a combination of oriented sample solid-state NMR spectroscopy and replica-averaged orientationally restrained molecular dynamics. They found that DWORF's structural topology consists of a dynamic N-terminal domain, an amphipathic juxtamembrane helix that crosses the lipid groups at an angle of 64 degrees , and a transmembrane C-terminal helix with an angle of 32 degrees. A kink induced by Pro15, unique to DWORF, separates the two helical domains. A single Pro15Ala mutant significantly decreases the kink and eliminates DWORF's activating effect on SERCA. | Eukaryota |
Metazoa, Chordata | DWORF of Homo sapiens |
1.A.50.4.2 | Sarcoplasmic/endoplasmic reticulum calcium ATPase regulator, DWORF-like protein, of 37 aas and 1 TMS. | Eukaryota |
Metazoa, Chordata | DWORF of Esox lucius |
1.A.50.4.3 | DWARF open reading frameof 82 aas and 1 C-terminal TMS. | Eukaryota |
Metazoa, Chordata | DWARF of Oreochromis niloticus |
1.A.50.4.4 | DWARF open reading frame isoform X1 of 99 aas and 1 C-terminal TMS. | Eukaryota |
Metazoa, Chordata | DWARF of Athene cunicularia |
1.A.50.4.5 | Dwarf homolog, isoform X2, of 123 aas and 1 C-terminal TMS. | Eukaryota |
Metazoa, Chordata | DWARF of Paramormyrops kingsleyae |
1.A.50.4.6 | DWARF or STRIT1 of 35 aas and 1 TMS. DWARF interacts with SERCA and phospholamban (PLB), counteracting the inhibitory effect of PLB on SERCA (Rustad et al. 2023). It enhances the activity of the ATP2A1/SERCA1 ATPase in the sarcoplasmic reticulum by displacing ATP2A1/SERCA1 inhibitors, thereby acting as a key regulator of skeletal muscle activity. It does not directly stimulate SERCA pump activity, but it enhances sarcoplasmic reticulum Ca2+ uptake and myocyte contractility by displacing the SERCA inhibitory peptides sarcolipin (SLN), phospholamban (PLN) and myoregulin (MRLN). | Eukaryota |
Metazoa, Chordata | DWARF of Homo sapiens |
1.A.50.6.1 | "Another-regulin", ALN, of 66 aas and 1 TMS. Also called Protein C4orf3. This protein and the other members of the phospholamban family have been designated "micropeptides". Micropeptides function as regulators of calcium-dependent signaling in muscle. The sarco/endoplasmic reticulum Ca2+ ATPase (SERCA, TC# 3.A.3.2.7), is the membrane pump that promotes muscle relaxation by taking up Ca2+ into the sarcoplasmic reticulum. It is directly inhibited by three known muscle-specific micropeptides: myoregulin (MLN), phospholamban (PLN) and sarcolipin (SLN). In non muscle cells, there are two other such micopeptides, endoregulin (ELN) and "another-regulin" (ALN) (Anderson et al. 2016). These proteins share key amino acids with their muscle-specific counterparts and function as direct inhibitors of SERCA pump activity. The distribution of transcripts encoding ELN and ALN mirror that of SERCA isoform-encoding transcripts in nonmuscle cell types. Thus, these two proteins are additional members of the SERCA-inhibitory micropeptide family, revealing a conserved mechanism for the control of intracellular Ca2+ dynamics in both muscle and nonmuscle cell types (Anderson et al. 2016). | Eukaryota |
Metazoa, Chordata | ALN in Homo sapiens |
1.A.50.6.2 | Uncharacterized protein of 93 aas and 1 TMS. | Eukaryota |
Metazoa, Chordata | UP of Larimichthys crocea (large yellow croaker) |
1.A.50.6.3 | Uncharacterized protein of 104 aas and 1 TMS | Eukaryota |
Metazoa, Chordata | UP of Xenopus laevis (African clawed frog) |
1.A.50.6.4 | Uncharacterized C4orf3 homologue of 77 aas and 1 TMS | Eukaryota |
Metazoa, Chordata | UP of Monodelphis domestica (Gray short-tailed opossum) |
1.A.50.6.5 | Uncharacterized protein of 139 aas and one C-terminal TMS. | Eukaryota |
Metazoa, Chordata | UP of Oryzias melastigma (Indian medaka) |
1.A.50.6.6 | Uncharacterized protein of 82 aas and 1 C-terminal TMS. | Eukaryota |
Metazoa, Chordata | UP of Platysternon megacephalum (big-headed turtle) |
1.A.50.7.1 | Neuronatin, NNAT, of 81 aas and 1 TMS. NNAT, in the endoplasmic reticulum, is involved in metabolic regulation. It shares sequence similarity with sarcolipin (SLN; TC# 1.A.50.2.1), which negatively regulates the SERCA that maintains energy homeostasis in muscles. Braun et al. 2021 showed that NNAT could uncouple the Ca2+ transport activity of SERCA from ATP hydrolysis like SLN. NNAT reduced Ca2+ uptake without altering SERCA activity, ultimately lowering the apparent coupling ratio of SERCA. This effect of NNAT was reversed by the adenylyl cyclase activator forskolin. Soleus muscles from high fat diet-fed mice showed downregulation in NNAT content compared with chow-fed mice, whereas an upregulation in NNAT content was observed in fast-twitch muscles from high fat diet- versus chow-fed mice. Therefore, NNAT is a SERCA uncoupler and may function in adaptive thermogenesis (Braun et al. 2021). | Eukaryota |
Metazoa, Chordata | NNAT of Homo sapiens |
1.A.50.7.2 | Neuronatin isoform X1 of 133 aas and 1 N-terminal TMS. | Eukaryota |
Metazoa, Chordata | NNAT of Phyllostomus discolor (pale spear-nosed bat) |