TCDB is operated by the Saier Lab Bioinformatics Group
TCIDNameDomainKingdom/PhylumProtein(s)
1.B.20.1.1









Outer membrane toxin channel protein, ShlB
Bacteria
Pseudomonadota
ShlB of Serratia marcescens
1.B.20.1.2









Outer membrane hemolysin secretion protein, HpmA
Bacteria
Pseudomonadota
HpmA of Proteus mirabilis
1.B.20.1.3









Outer membrane transporter essential for contact-dependent growth inhibition, CdiB, of 588 aas and possibly two TMSs, one N-terminal and one near the C-terminus (Q3YL97). It exports the protein toxin, CdiA (AAZ57198) (Aoki et al., 2005). It mediates contact-dependent growth inhibition (CDI), a phenomenon by which bacterial cell growth is regulated by direct cell-to-cell contact. The CdiA/CdiB two-partner secretion system appears to play a direct role (Aoki et al. 2008). The 3-d structure of this secretion system and one other have been determined (Guerin et al. 2020).

Bacteria
Pseudomonadota
CdiB of E. coli (AAZ57197)
1.B.20.1.4









The outer membrane haemolysin-like OptA exporter, OptB (OptA, AAG55657, resembles Alveicin B, 1.C.75.1.1) (Choi et al., 2007). Choi and Bernstein (2010) have demonstrated that BpaA is secreted in a two step process, and the C-terminus of OtpA enters the OtpB pore before the N-terminus.

Bacteria
Pseudomonadota
OptB of E. coli (Q8XAN8)
1.B.20.1.5









The HrpA/HrpB TPS adhesin system (HrpB = HecB) (Schmitt et al., 2007)

Bacteria
Pseudomonadota
HecB of Neisseria meningitidis (Q9JY22)
1.B.20.1.6









Outer membrane hemagglutinin secretion protein, FhaC. Functionally important conserved motifs have been identified (Delattre et al., 2010).  The x-ray structure reveals a beta-barrel pore obstructed by two structural elements conserved in all two partner secretion systems, an N-terminal α-helix and an extracellular loop.  FhaC goes from the closed to the open state in the presence of the filamentous haemagglutinin adhesin, FHA.  The N-terminal α-helix is displaced into the periplasm during FHA secretion (Guérin et al. 2014).  With two POTRA domains in the periplasm, a transmembrane beta barrel and a large loop harboring a functionally important motif, FhaC epitomizes the conserved features of the superfamily (Jacob-Dubuisson et al. 2009). The conserved secretion domain of FHA interacts with the POTRA domains, specific extracellular loops and strands of FhaC and the inner beta-barrel surface. The interaction map indicates a funnel-like pathway, with conformationally flexible FHA entering the channel in a non-exclusive manner and exiting along a four-stranded beta-sheet at the surface of the FhaC barrel. This sheet of FhaC guides the secretion domain of FHA along discrete steps of translocation and folding (Baud et al. 2014).  The membrane-proximal POTRA domain exists in several conformations, and the binding of FHA displaces this equilibrium (Guérin et al. 2015). TpsB (Two Partner Secretion) transporters belong to the Omp85 or OMPPI superfamily, whose members catalyze protein insertion into, or translocation across membranes. They are composed of a transmembrane β barrel preceded by two periplasmic POTRA domains that bind the incoming protein substrate. Sicoli et al. 2022 detected minor states in heterogeneous populations, identifying transient conformers of FhaC. This revealed substantial, spontaneous conformational changes on a slow time scale, with parts of the POTRA2 domain approaching the lipid bilayer and the protein's surface loops. An amphipathic POTRA2 β hairpin inserts into the β barrel, and these motions enlarge the channel to initiate substrate secretion. This shows how TpsB transporters mediate protein secretion without the need for cofactors, by utilizing intrinsic protein dynamics (Sicoli et al. 2022).

Bacteria
Pseudomonadota
FhaC of Bordetella pertussis (P35077)
1.B.20.1.7









Portra domain containing ShlB-type family protein of 354 aas and 2 α-TMSs, one N-terminal and one C-terminal.

Bacteria
Pseudomonadota
ShlB-type protein of E. coli
1.B.20.1.8









Hemolysin activator protein, ExlB of 570 aas. Exports the exotoxin, ExlA (TC# 1.C.73.1.1) (Elsen et al. 2014; Basso et al. 2017).

Bacteria
Pseudomonadota
ExlB of Pseudomonas aeruginosa
1.B.20.1.9









Outer membrane exporter of the ChlA exotoxin, ChlB, of 566 aas (Brumbach et al. 2007).

Bacteria
Pseudomonadota
ChlB of Chromobacterium violaceum
1.B.20.1.10









Outer membrane protein component of a toxin-immunity protein module, which functions as a cellular contact-dependent growth inhibition (CDI) system. CdiB is of 584 aas and possibly two TMSs, one N-terminal, and one C-terminal. CDI modules allow bacteria to communicate with and inhibit the growth of closely related neighboring bacteria in a contact-dependent fashion. CdiB is required for secretion and assembly of the CdiA toxin protein. Expression of the cdiAIB locus in B. thailandensis confers protection against other bacteria carrying the locus; growth inhibition requires cellular contact (Nikolakakis et al. 2012). The 3-d structures of two such systems have been determined (see family description) (Guerin et al. 2020).

Bacteria
Pseudomonadota
CdiB2 of Burkholderia pseudomallei
1.B.20.1.11









CdiB (FhaC) of 562 aas and one N-terminal TMS.

Bacteria
Pseudomonadota
CdiB of Yersinia pestis
1.B.20.1.12









CdiB of 579 aas and one N-terminal α-TMS.  The 3-D structure has been determined (see family description) (Guerin et al. 2020).

Bacteria
Pseudomonadota
CdiB of Acinetobacter baumannii
1.B.20.2.1









Hypothetical protein of 579 aas

Bacteria
Pseudomonadota
HP of Erythrobacter litoralis
1.B.20.2.2









The ShlB/FhaC/HecB family hemolysin secretion/activation protein of 555 aas.

Bacteria
Pseudomonadota
Cytotoxin of Cupriavidus taiwanensis
1.B.20.2.3









Putative type Vb secretion system, beta-barrel domain proteinof 584 aas.

Bacteria
Pseudomonadota
cytotoxin exporter of Bradyrhizobium japonicum
1.B.20.3.1









Heme-hemopexin utilization protein B precursor
Bacteria
Pseudomonadota
Hxb2 of Haemophilus influenzae
1.B.20.3.2









HMW1B outer membrane exporter, required for secretion of HMW1A and HMW2A adhesins (exhibit a twin pore dimeric structure) (Li et al., 2007) and forms a large-conductance channel (Duret et al., 2008).  The protein has a modular three domain structure: an N-terminal  membrane domain, a central periplasmic domain and a C-terminal membrane anchor domain that oligomerizes and forms a pore (Surana et al. 2006).  The periplasmic domain is required for secretion.

Bacteria
Pseudomonadota
HMW1B of Haemophilus influenzae (Q4QJR3)
1.B.20.3.3









EtpB, a functionally asymmetric pore with three conductance states (Meli et al., 2009).

Bacteria
Pseudomonadota
EtpB of E. coli (Q29XT8)
1.B.20.3.4









The BpaB outer membrane channel protein. Exports BpaA (Brown et al., 2004). BpaA is very large (~530kDa) and contains 3 repeats, each ~700aas in length.

Bacteria
Pseudomonadota
BpaB of Burkholderia pseudomallei (Q6Y659)
1.B.20.3.5









Hypothetical protein of 576 aas

Bacteria
Chlorobiota
HP of Chlorobium chlorochromatii
1.B.20.3.6









Two component virulence-related protein exporter, PdtB of 544 aas.  Exports the PdtA adhesin (4180 aas; Q9I5N6) to the cell surface for processing (Faure et al. 2014).

Bacteria
Pseudomonadota
PdtB of Pseudomonas aeruginosa
1.B.20.3.7









Uncharacterized protein of 455 aas and 1 N-terminal TMS.

Bacteria
Cyanobacteriota
UP of Oscillatoriales cyanobacterium
1.B.20.4.1









Pore-forming outer membrane constituent CptB of 441 aas, of an export system for cytotoxic, CptA (TC# 1.C.75.1.8) (Gentile et al. 2020).

Bacteria
Fusobacteriota
CptB of Sneathia amnii
1.B.20.4.2









Uncharacterized protein of 497 aas and 1 N-terminal TMS.

Bacteria
Pseudomonadota
UP of Phocoenobacter uteri