TCID | Name | Domain | Kingdom/Phylum | Protein(s) |
---|---|---|---|---|
2.A.28.1.1 | Organic acid/(conjugated) bile acid (taurocholate):Na+ symporter. Taurine conjugates > glycine conjugates > unconjugated bile salts. The initial effect on hepatic bile flow of cholestatic agents such as thorazine and estradiol 17beta-glucuronide are on water flow and not bile salt export pump-mediated bile acid transport (Javitt 2020). | Eukaryota |
Metazoa, Chordata | Liver bile acid uptake system of Rattus norvegicus |
2.A.28.1.2 | Liver/ileal bile acid:Na+ symporter, ASBT, ISBT or NTCP2 (SLC10A2) of 348 aas and 7 TMSs (Mareninova et al. 2005) (essential for liver or intestinal bile acid transport and homeostasis (Rao et al., 2008). This BART superfamily protein has been modeled in 3-dimensions using the 3-D structure of bacteriorhodopsin (a TOG superfamily member) (Zhang et al. 2004). TMS4 forms part of the substrate translocation pathway (Khantwal and Swaan, 2008); TMS7 plays a role in substrate binding and translocation (González et al., 2012); TMS1 contributes to substrate translocation and protein stability (da Silva et al., 2011), and TMS2 coordinates Na+ translocation (Sabit et al. 2013). NTCP serves as the Hepatitis B Virus (HBV) receptor, and drugs developed to target NTCP induce autophagy and may provide therapy for HBV (Zhang et al. 2015). Decreased activity leads to luminal bile salt concentrations and either increased eletrolyte secretion or decreased reabsolption (van der Mark et al., 2014). Function and stability depend on N-glycosylation (Muthusamy et al. 2015). Specific inhibitors are known (Slijepcevic and van de Graaf 2017). It has a 7 TMS topology (Banerjee and Swaan 2006). Chronic hepatitis B, C and D viruses (HBV, HCV and HDV) infect the liver and cause cancer. The three viruses are exclusively hepatotropic, and NTCP mediates the transport of bile acids and plays a key role in HBV HCV and HDV entry into hepatocytes. It modulates HCV infection by regulating innate antiviral immune responses in the liver (Eller et al. 2018). The S-acylation status of hASBT regulates its function, metabolic stability, membrane expression, and phosphorylation state (Ayewoh et al. 2020). The GXXXG/A motifs in TMS2 and TMS7 are important for proper folding and sorting of NTCP, and they indirectly affect glycosylation, homodimerization, and bile acid transport, as well as its HBV/HDV receptor function (Palatini et al. 2021). Structural plasticity is a feature of rheostat positions in the human Na+/taurocholate cotransporting polypeptide (NTCP) (Ruggiero et al. 2022). A monoclonal antibody against human NTCP blocks Hepatitis B virus infection (Takemori et al. 2022). NTCP interacts directly with the first 48 amino acid residues of the N-myristoylated N-terminal preS1 domain of the hepatitis viral large protein. 3-d structural analyses suggest that members of the SLC10 family share a common mechanism of bile acid transport, but the NTCP structure displays an additional pocket formed by residues that are known to interact with preS1 (Park et al. 2022). Genetic variants of NTCP gene influence hepatitis B vaccine failure (Chen et al. 2022). Enhanced oral absorption and liver distribution of polymeric nanoparticles can be achieved through traveling the enterohepatic circulation pathways of bile acids using ASBT (Wang et al. 2022). | Eukaryota |
Metazoa, Chordata | NTCP of Homo sapiens |
2.A.28.1.3 | The organic anion:Na+ symporter, SOAT (transports estrone-3-sulfate (Km= 31 μM) and dehydropiandrosterone sulfate (Km = 30 μM) but not taurocholate, estradiol-17β-glucuronide or ouabain) (Geyer et al., 2004) | Eukaryota |
Metazoa, Chordata | SOAT of Rattus norvegicus (Q70EX6) |
2.A.28.1.4 | The organic anion:Na+ symporter, SOAT (probable paralogue of 2.A.28.1.3); a 7 TMS protein with the N-terminus out and the C-terminus in. Transports dehydroepiandrosterone sulfate, estrone-3-sulfate, and pregnenolone sulfate with Km values of 30, 12 and 11 μM, respectively. Sulfoconjugated taurolithocholate is also a substrate. Cholate, taurocholate and chenodeoxycholate are not substrates. (Geyer et al., 2007). It is expressed in the CNS (Sreedharan et al. 2011). | Eukaryota |
Metazoa, Chordata | SLC10A6 of Homo sapiens |
2.A.28.1.5 | solute carrier family 10 (sodium/bile acid cotransporter family), member 3 | Eukaryota |
Metazoa, Chordata | SLC10-3 of Bos taurus (Q0V8N6) |
2.A.28.1.6 | solute carrier family 10 (sodium/bile acid cotransporter family), member 5 | Eukaryota |
Metazoa, Chordata | SLC10A5 of Homo sapiens |
2.A.28.1.7 | Solute carrier family 10 (sodium/bile acid cotransporter family), member 4. The rat orthologue is found in cholinergic neurons of the brain together with the vesicular acetyl choline transporter, VAChT (TC# 2.A.1.2.28), and the high affinity choline transporter, CHT1 (TC#s 2.A.21.8.1 & 2) (Geyer et al. 2008). It is a protease-activated bile acid transporter (Abe et al. 2013). It has also been reported to be a vesicular monoaminergic and cholinergic associated transporter that is important for dopamine homeostasis and neuromodulation in vivo, and it may play a role in neurotransmitter release at the neuromuscular junction (Larhammar et al. 2015; Patra et al. 2015). It's loss in mice results in cognitive impairment (Melief et al. 2016). | Eukaryota |
Metazoa, Chordata | SLC10A4 of Homo sapiens |
2.A.28.1.8 | P3 protein (Solute carrier family 10 member 3) | Eukaryota |
Metazoa, Chordata | SLC10A3 of Homo sapiens |
2.A.28.1.9 | Sodium/bile acid cotransporter (Cell growth-inhibiting gene 29 protein; Na+/bile acid cotransporter; Na+/taurocholate transport protein; NTCP; Solute carrier family 10 member 1). Transports steroids and xenobiotics, including HMG-CoA reductase inhibiitors (statins). This protein is the hepatitis B and D virus receptor (Yan et al. 2012). Specific inhibitors are known and include cyclosporin A (Wu et al. 2020, Slijepcevic and van de Graaf 2017). hNTCP-membrane vesicles effectively prevent viral infection, spreading, and replication in a human-liver-chimeric mouse model of HBV infection (Liu et al. 2018). The dye, indocyaine green (ICG), is a substrate, and NTCP and ICG form a reporter system with applications in cancer biology, robust drug-drug interactions, and drug screening in HBV/HDV infections (Wu et al. 2020). Structural plasticity is a feature of rheostat positions in the Human Na+/taurocholate cotransporting polypeptide (NTCP) (Ruggiero et al. 2022). Findings on protein-protein interactions (PPIs) between NTCP and cofactors relevant for entry of the virus/NTCP receptor complex have been summarized (Zakrzewicz and Geyer 2023).
| Eukaryota |
Metazoa, Chordata | SLC10A1 of Homo sapiens |
2.A.28.1.10 | BASS family homologue | Bacteria |
Myxococcota | BASS family homologue of Myxococcus xanthus |
2.A.28.1.11 | Apical sodium-dependent bile acid transporter, SBAT of 546 aas and 9 - 12 TMSs. It is essential for survival of a carcinogenic liver fluke Clonorchis sinensis in the bile (Dai et al. 2020). | Eukaryota |
Metazoa, Platyhelminthes | SBAT of Clonorchis sinensis |
2.A.28.2.1 | The chloroplastic glucosinolate uptake porter, BAT5 (Gigolashvili et al., 2009) [glucosinolates are thioglucosides of amino acid derivatives. These bitter natural pesticides are present in most plants of the order Brassicales among others]. | Eukaryota |
Viridiplantae, Streptophyta | BAT5 of Arabidopsis thaliana (Q3EA49) |
2.A.28.2.2 | Chloroplast envelope membrane pyruvate:Na+ symporter, called Bile acid:sodium symporter, protein 2, BASS2 (widely distributed in all land plants tested) (Furumoto et al., 2011). | Eukaryota |
Viridiplantae, Streptophyta | BASS2 of Flaveria trinervia (E0D3H5) |
2.A.28.2.3 | Chloroplast envelope membrane pyruvate:Na+ symporter, BASS2. (Orthologous to 2.A.28.2.2) (Furumoto et al., 2011; Furumoto 2016). The wheat ortholog functions in salt tolerance (Zhao et al. 2016). | Eukaryota |
Viridiplantae, Streptophyta | BASS2 pf Arabidopsis thaliana (Q1EBV7) |
2.A.28.2.4 | Na+:bile acid symporter (AstB). The 3-d structure is available (3ZUX). | Bacteria |
Pseudomonadota | AstB of Neisseria meningitidis (Q9K0A9) |
2.A.28.2.5 | Putative Na+ symporter | Bacteria |
Bacillota | YqcL of Paenibacillus sp. JDR-2 (C6CWW0) |
2.A.28.2.6 | Probable macrolide resistance porter (very similar to the orthologue in B. brevis) (Margolles et al. 2005). | Bacteria |
Actinomycetota | Macrolide resistance protein of Bifidobacterium longum |
2.A.28.2.7 | Putative Na+ symporter (10 TMSs) | Archaea |
Euryarchaeota | Putative Na+ symporter of Halomicrobium mukohataei (C7NY93) |
2.A.28.2.8 | Putative integral membrane protein | Bacteria |
Actinomycetota | Putative integral membrane protein of Streptomyces coelicolor |
2.A.28.2.9 | Sodium bile acid symporter family protein, ASBT, of 307 aas and 10 TMSs. The 3-d structure has been solved (4N7W and 4N7X) (Zhou et al. 2014). This structure has been used to model the yeast Acr3 protein (TC# 2.A.59.1.1) which is in a distinct family of the BART superfamily (Wawrzycka et al. 2016). | Bacteria |
Pseudomonadota | ASBT of Yersinia frederiksenii |
2.A.28.3.1 | Solute carrier family 10, member 7 protein (358 aas; 10 established TMSs with the N- and C-termini in the cytoplasm (Godoy et al. 2007)) (Zou et al., 2005). Present in the plasma membrane. Slc10a7 KO mice exhibit moderate skeletal dysplasia (osteochondrodyplasia), characterized by markedly shortened and mildly bowed limbs (Brommage et al. 2014). SLC10A7 plays roles in glycosaminoglycan synthesis and skeletal development, and mutants in its gene can cause skeletal dysplasia in mice and humans (Dubail et al. 2018). It plays a role in bone mineralization and transport of glycoproteins to the extracellular matrix (Ashikov et al. 2018). However it has been reported to not show transport activity towards bile acids and steroid sulfates (including taurocholate, cholate, chenodeoxycholate, estrone-3-sulfate, dehydroepiandrosterone sulfate (DHEAS) and pregnenolone sulfate) (Godoy et al. 2007). | Eukaryota |
Metazoa, Chordata | SLC10A7 of Homo sapiens |
2.A.28.3.2 | Putative Na+-dependent transporter | Eukaryota |
Viridiplantae, Streptophyta | Putative transporter of Arabidopsis thaliana (Q9LYM5) |
2.A.28.3.3 | Putative Na+-dependent transporter | Bacteria |
Pseudomonadota | Putative transporter of Paracoccus denitrificans |
2.A.28.3.4 | Putative Na+-dependent transporter, YfeH (332 aas; 7-10 TMSs) | Bacteria |
Pseudomonadota | YfeH of E. coli (P39836) |
2.A.28.3.5 | Putative Na+-dependent transporter (322 aas; 8-10 TMSs) | Bacteria |
Lentisphaerota | Transporter of Lentisphaera araneosa (A6DUG7) |
2.A.28.3.6 | Fusion Protein of 928aas: N-terminal Cysteine proteinase/Cathepsin F (residues 1-578/Peptidase CIA family) C-terminal BART sugar family domain (579-928). | Eukaryota |
Viridiplantae, Chlorophyta | Protease/transporter fusion protein of Ostreococcus tauri (Q01E11) |
2.A.28.3.7 | RCh1p transporter (SLC10 family). Regulates cytosolic Ca2+ homeostasis (Jiang et al., 2012). Rch1p is part of the low-affinity calcium uptake system (LACS) system and does not functionally interact with Cch1p (Alber et al. 2013). | Eukaryota |
Fungi, Ascomycota | RCh1p of Candida albicans (Q59UQ7) |
2.A.28.4.1 | Uncharacterized protein of 360 aas with an N-terminal hydrophobic domain of 4 - 5 TMSs homologous to members of this family. The C-terminal hydrophilic domain may be related to TC# 1.C.96, and 1.C.96 may be related to 1.C.5 in the aerolysin superfamily. | Metazoa, Mollusca | UP of Crassostrea gigas (Pacific oyster) (Crassostrea angulata) |